miRNA display CGI


Results 61 - 80 of 1515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21606 5' -63.5 NC_004812.1 + 100701 0.81 0.080556
Target:  5'- gGCGugUCGCAGCGCGACcGUCGCCa -3'
miRNA:   3'- gCGCugGGUGUCGCGCUGcCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 127730 0.8 0.0877
Target:  5'- cCGCGGCCCGCggccagcgcacgcgcGGCGCGGCGGCgggGUCCg -3'
miRNA:   3'- -GCGCUGGGUG---------------UCGCGCUGCCGg--CGGG- -5'
21606 5' -63.5 NC_004812.1 + 11077 0.79 0.111258
Target:  5'- gCGCGAaCCGgGGCGCcGCGaGCCGCCCa -3'
miRNA:   3'- -GCGCUgGGUgUCGCGcUGC-CGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 14824 0.79 0.111258
Target:  5'- gCGCGGCCCGCccccccGCGCGGCcguucgacGCCGCCCc -3'
miRNA:   3'- -GCGCUGGGUGu-----CGCGCUGc-------CGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 116542 0.78 0.11319
Target:  5'- cCGCcGCCCggaaaagcgcacgaGCGGcCGCGGCGGCCGCUCg -3'
miRNA:   3'- -GCGcUGGG--------------UGUC-GCGCUGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 100524 0.78 0.114028
Target:  5'- gGCG-CCCACgucgGGCGCGGCgaGGCCGCCg -3'
miRNA:   3'- gCGCuGGGUG----UCGCGCUG--CCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 107424 0.78 0.114028
Target:  5'- gGCcaGGCCCACcggccGCGCGGCGGCCGUCg -3'
miRNA:   3'- gCG--CUGGGUGu----CGCGCUGCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 69550 0.78 0.114028
Target:  5'- cCGCGccccuGCCCGCGGCGC--CGGCCGCgCCg -3'
miRNA:   3'- -GCGC-----UGGGUGUCGCGcuGCCGGCG-GG- -5'
21606 5' -63.5 NC_004812.1 + 87035 0.78 0.119469
Target:  5'- aCGCGAUCUacgaacuGCAGCGCauguucgugGACGuGCCGCCCa -3'
miRNA:   3'- -GCGCUGGG-------UGUCGCG---------CUGC-CGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 49408 0.78 0.122729
Target:  5'- gGCGGCCCGCGcCGUGGCcccgGGCCGCCg -3'
miRNA:   3'- gCGCUGGGUGUcGCGCUG----CCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 74851 0.79 0.100796
Target:  5'- cCGCGGCCUccaGCgAGCGCcgcagGGCGGCCGUCCg -3'
miRNA:   3'- -GCGCUGGG---UG-UCGCG-----CUGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 83366 0.79 0.100796
Target:  5'- gCGcCGGCCC-CAGgGCGGCGGCgGUCCg -3'
miRNA:   3'- -GC-GCUGGGuGUCgCGCUGCCGgCGGG- -5'
21606 5' -63.5 NC_004812.1 + 138727 0.8 0.089022
Target:  5'- gGCgGGCCCGCGGCGUGccggcCGGUCGCCCc -3'
miRNA:   3'- gCG-CUGGGUGUCGCGCu----GCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 60088 0.8 0.093566
Target:  5'- gGCGGCCCGCgccagguaGGCGcCGAUGGCCgugGCCCg -3'
miRNA:   3'- gCGCUGGGUG--------UCGC-GCUGCCGG---CGGG- -5'
21606 5' -63.5 NC_004812.1 + 125676 0.8 0.095682
Target:  5'- cCGCGGCCCGCcGCGCGuuuauuuucgcgcGCGcGCCGCCg -3'
miRNA:   3'- -GCGCUGGGUGuCGCGC-------------UGC-CGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 98410 0.8 0.09592
Target:  5'- gGCGGCgCCGCAGCgucucgguGCGGCGGCCGCg- -3'
miRNA:   3'- gCGCUG-GGUGUCG--------CGCUGCCGGCGgg -5'
21606 5' -63.5 NC_004812.1 + 112981 0.8 0.09592
Target:  5'- gGCGAUggaUCGCGGCGCcGCGGCCGCCg -3'
miRNA:   3'- gCGCUG---GGUGUCGCGcUGCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 93594 0.79 0.098329
Target:  5'- gCGCGcGCUCGCGGaCGCGGCGGCCcgcgcuuccGCCCg -3'
miRNA:   3'- -GCGC-UGGGUGUC-GCGCUGCCGG---------CGGG- -5'
21606 5' -63.5 NC_004812.1 + 118428 0.79 0.098329
Target:  5'- gGCGGCCuCACA-CGCGGCcGCCGCCCc -3'
miRNA:   3'- gCGCUGG-GUGUcGCGCUGcCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 19627 0.79 0.100796
Target:  5'- gCGCGuccgguCUCGCGGCGaCGugGGCCGCCa -3'
miRNA:   3'- -GCGCu-----GGGUGUCGC-GCugCCGGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.