Results 81 - 100 of 1515 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21606 | 5' | -63.5 | NC_004812.1 | + | 125240 | 0.78 | 0.128868 |
Target: 5'- gCGCGugCgCACgcaGGCGCGcCGGCgGCCCg -3' miRNA: 3'- -GCGCugG-GUG---UCGCGCuGCCGgCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 62129 | 0.77 | 0.130765 |
Target: 5'- gGCGGCCCggaggccggaucgGCGGCGCgGGCGGCCuccggguucuucggGCCCg -3' miRNA: 3'- gCGCUGGG-------------UGUCGCG-CUGCCGG--------------CGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 99124 | 0.77 | 0.131083 |
Target: 5'- gGCcagGACCCGCAgGUGgccgaagacgucucCGACGGCCGCCCg -3' miRNA: 3'- gCG---CUGGGUGU-CGC--------------GCUGCCGGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 139100 | 0.77 | 0.132043 |
Target: 5'- cCGCGACCgAgGGCGCGuCGGCgaCGUCCg -3' miRNA: 3'- -GCGCUGGgUgUCGCGCuGCCG--GCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 106512 | 0.77 | 0.132043 |
Target: 5'- cCGCGGCgCGgGGCGcCGGCGGCCGCg- -3' miRNA: 3'- -GCGCUGgGUgUCGC-GCUGCCGGCGgg -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 115388 | 0.77 | 0.13529 |
Target: 5'- gGCGGCgaCCGCAGCGCGuagucGCCGCCCc -3' miRNA: 3'- gCGCUG--GGUGUCGCGCugc--CGGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 151705 | 0.77 | 0.138611 |
Target: 5'- aGCGAgCgGCGGCGCGcGCGcGCCGCCg -3' miRNA: 3'- gCGCUgGgUGUCGCGC-UGC-CGGCGGg -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 49408 | 0.78 | 0.122729 |
Target: 5'- gGCGGCCCGCGcCGUGGCcccgGGCCGCCg -3' miRNA: 3'- gCGCUGGGUGUcGCGCUG----CCGGCGGg -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 87035 | 0.78 | 0.119469 |
Target: 5'- aCGCGAUCUacgaacuGCAGCGCauguucgugGACGuGCCGCCCa -3' miRNA: 3'- -GCGCUGGG-------UGUCGCG---------CUGC-CGGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 69550 | 0.78 | 0.114028 |
Target: 5'- cCGCGccccuGCCCGCGGCGC--CGGCCGCgCCg -3' miRNA: 3'- -GCGC-----UGGGUGUCGCGcuGCCGGCG-GG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 118428 | 0.79 | 0.098329 |
Target: 5'- gGCGGCCuCACA-CGCGGCcGCCGCCCc -3' miRNA: 3'- gCGCUGG-GUGUcGCGCUGcCGGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 19627 | 0.79 | 0.100796 |
Target: 5'- gCGCGuccgguCUCGCGGCGaCGugGGCCGCCa -3' miRNA: 3'- -GCGCu-----GGGUGUCGC-GCugCCGGCGGg -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 83366 | 0.79 | 0.100796 |
Target: 5'- gCGcCGGCCC-CAGgGCGGCGGCgGUCCg -3' miRNA: 3'- -GC-GCUGGGuGUCgCGCUGCCGgCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 74851 | 0.79 | 0.100796 |
Target: 5'- cCGCGGCCUccaGCgAGCGCcgcagGGCGGCCGUCCg -3' miRNA: 3'- -GCGCUGGG---UG-UCGCG-----CUGCCGGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 11077 | 0.79 | 0.111258 |
Target: 5'- gCGCGAaCCGgGGCGCcGCGaGCCGCCCa -3' miRNA: 3'- -GCGCUgGGUgUCGCGcUGC-CGGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 14824 | 0.79 | 0.111258 |
Target: 5'- gCGCGGCCCGCccccccGCGCGGCcguucgacGCCGCCCc -3' miRNA: 3'- -GCGCUGGGUGu-----CGCGCUGc-------CGGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 116542 | 0.78 | 0.11319 |
Target: 5'- cCGCcGCCCggaaaagcgcacgaGCGGcCGCGGCGGCCGCUCg -3' miRNA: 3'- -GCGcUGGG--------------UGUC-GCGCUGCCGGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 100524 | 0.78 | 0.114028 |
Target: 5'- gGCG-CCCACgucgGGCGCGGCgaGGCCGCCg -3' miRNA: 3'- gCGCuGGGUG----UCGCGCUG--CCGGCGGg -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 107424 | 0.78 | 0.114028 |
Target: 5'- gGCcaGGCCCACcggccGCGCGGCGGCCGUCg -3' miRNA: 3'- gCG--CUGGGUGu----CGCGCUGCCGGCGGg -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 1681 | 0.77 | 0.138611 |
Target: 5'- cCGCGGCCCGCc-CGCGGCGGgggaUGCCCu -3' miRNA: 3'- -GCGCUGGGUGucGCGCUGCCg---GCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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