miRNA display CGI


Results 101 - 120 of 1515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21606 5' -63.5 NC_004812.1 + 154505 0.77 0.149025
Target:  5'- uGgGACUgGgAGCGCGGCccgGGCCGCCCc -3'
miRNA:   3'- gCgCUGGgUgUCGCGCUG---CCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 94359 0.77 0.149025
Target:  5'- gCGCGGCCC-CGGCGCGcUGGuUUGCCCu -3'
miRNA:   3'- -GCGCUGGGuGUCGCGCuGCC-GGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 68877 0.77 0.149025
Target:  5'- cCGCGGCCC-CGGCGCc-CGcGCCGCCUc -3'
miRNA:   3'- -GCGCUGGGuGUCGCGcuGC-CGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 98380 0.77 0.149025
Target:  5'- aCGgGuCCUcggGCGGCGCGGCGGCCGCg- -3'
miRNA:   3'- -GCgCuGGG---UGUCGCGCUGCCGGCGgg -5'
21606 5' -63.5 NC_004812.1 + 45590 0.77 0.15192
Target:  5'- gGCGACCCAguagugcucccgcucCAGCGCccucaugggcgcgggGACGGCCGCgCu -3'
miRNA:   3'- gCGCUGGGU---------------GUCGCG---------------CUGCCGGCGgG- -5'
21606 5' -63.5 NC_004812.1 + 139100 0.77 0.132043
Target:  5'- cCGCGACCgAgGGCGCGuCGGCgaCGUCCg -3'
miRNA:   3'- -GCGCUGGgUgUCGCGCuGCCG--GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 99124 0.77 0.131083
Target:  5'- gGCcagGACCCGCAgGUGgccgaagacgucucCGACGGCCGCCCg -3'
miRNA:   3'- gCG---CUGGGUGU-CGC--------------GCUGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 11077 0.79 0.111258
Target:  5'- gCGCGAaCCGgGGCGCcGCGaGCCGCCCa -3'
miRNA:   3'- -GCGCUgGGUgUCGCGcUGC-CGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 14824 0.79 0.111258
Target:  5'- gCGCGGCCCGCccccccGCGCGGCcguucgacGCCGCCCc -3'
miRNA:   3'- -GCGCUGGGUGu-----CGCGCUGc-------CGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 116542 0.78 0.11319
Target:  5'- cCGCcGCCCggaaaagcgcacgaGCGGcCGCGGCGGCCGCUCg -3'
miRNA:   3'- -GCGcUGGG--------------UGUC-GCGCUGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 100524 0.78 0.114028
Target:  5'- gGCG-CCCACgucgGGCGCGGCgaGGCCGCCg -3'
miRNA:   3'- gCGCuGGGUG----UCGCGCUG--CCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 107424 0.78 0.114028
Target:  5'- gGCcaGGCCCACcggccGCGCGGCGGCCGUCg -3'
miRNA:   3'- gCG--CUGGGUGu----CGCGCUGCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 69550 0.78 0.114028
Target:  5'- cCGCGccccuGCCCGCGGCGC--CGGCCGCgCCg -3'
miRNA:   3'- -GCGC-----UGGGUGUCGCGcuGCCGGCG-GG- -5'
21606 5' -63.5 NC_004812.1 + 87035 0.78 0.119469
Target:  5'- aCGCGAUCUacgaacuGCAGCGCauguucgugGACGuGCCGCCCa -3'
miRNA:   3'- -GCGCUGGG-------UGUCGCG---------CUGC-CGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 49408 0.78 0.122729
Target:  5'- gGCGGCCCGCGcCGUGGCcccgGGCCGCCg -3'
miRNA:   3'- gCGCUGGGUGUcGCGCUG----CCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 155998 0.78 0.122729
Target:  5'- cCGCGugCuCGCGGCGCGGgGGaggggaCGCCCg -3'
miRNA:   3'- -GCGCugG-GUGUCGCGCUgCCg-----GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 73881 0.78 0.125764
Target:  5'- gGCGGCgUACAGCuCGGCGGCCGCggCCg -3'
miRNA:   3'- gCGCUGgGUGUCGcGCUGCCGGCG--GG- -5'
21606 5' -63.5 NC_004812.1 + 144402 0.78 0.128555
Target:  5'- gGCGGCgUgguacgaGCGGCGCGACGGCgGCUCg -3'
miRNA:   3'- gCGCUGgG-------UGUCGCGCUGCCGgCGGG- -5'
21606 5' -63.5 NC_004812.1 + 125240 0.78 0.128868
Target:  5'- gCGCGugCgCACgcaGGCGCGcCGGCgGCCCg -3'
miRNA:   3'- -GCGCugG-GUG---UCGCGCuGCCGgCGGG- -5'
21606 5' -63.5 NC_004812.1 + 62129 0.77 0.130765
Target:  5'- gGCGGCCCggaggccggaucgGCGGCGCgGGCGGCCuccggguucuucggGCCCg -3'
miRNA:   3'- gCGCUGGG-------------UGUCGCG-CUGCCGG--------------CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.