miRNA display CGI


Results 121 - 140 of 1515 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21606 5' -63.5 NC_004812.1 + 115481 0.76 0.160146
Target:  5'- gCGCGugCgGCcGCGCcgGGCGGCgGCCCg -3'
miRNA:   3'- -GCGCugGgUGuCGCG--CUGCCGgCGGG- -5'
21606 5' -63.5 NC_004812.1 + 145742 0.76 0.160146
Target:  5'- gGCGACCCGgGGCGCGcggGCGGagCGaCCCg -3'
miRNA:   3'- gCGCUGGGUgUCGCGC---UGCCg-GC-GGG- -5'
21606 5' -63.5 NC_004812.1 + 40290 0.77 0.145477
Target:  5'- cCGCcGCCaGCAGgGCGAcaaCGGCCGCCCc -3'
miRNA:   3'- -GCGcUGGgUGUCgCGCU---GCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 143299 0.77 0.142006
Target:  5'- -cCGACCCcCGGCGCGGCGGagacgcggaCGCCCc -3'
miRNA:   3'- gcGCUGGGuGUCGCGCUGCCg--------GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 124446 0.77 0.141663
Target:  5'- cCGCGGCCgGCGGaccaacgggcggcCGCGGC-GCCGCCCg -3'
miRNA:   3'- -GCGCUGGgUGUC-------------GCGCUGcCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 87035 0.78 0.119469
Target:  5'- aCGCGAUCUacgaacuGCAGCGCauguucgugGACGuGCCGCCCa -3'
miRNA:   3'- -GCGCUGGG-------UGUCGCG---------CUGC-CGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 49408 0.78 0.122729
Target:  5'- gGCGGCCCGCGcCGUGGCcccgGGCCGCCg -3'
miRNA:   3'- gCGCUGGGUGUcGCGCUG----CCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 155998 0.78 0.122729
Target:  5'- cCGCGugCuCGCGGCGCGGgGGaggggaCGCCCg -3'
miRNA:   3'- -GCGCugG-GUGUCGCGCUgCCg-----GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 73881 0.78 0.125764
Target:  5'- gGCGGCgUACAGCuCGGCGGCCGCggCCg -3'
miRNA:   3'- gCGCUGgGUGUCGcGCUGCCGGCG--GG- -5'
21606 5' -63.5 NC_004812.1 + 144402 0.78 0.128555
Target:  5'- gGCGGCgUgguacgaGCGGCGCGACGGCgGCUCg -3'
miRNA:   3'- gCGCUGgG-------UGUCGCGCUGCCGgCGGG- -5'
21606 5' -63.5 NC_004812.1 + 125240 0.78 0.128868
Target:  5'- gCGCGugCgCACgcaGGCGCGcCGGCgGCCCg -3'
miRNA:   3'- -GCGCugG-GUG---UCGCGCuGCCGgCGGG- -5'
21606 5' -63.5 NC_004812.1 + 62129 0.77 0.130765
Target:  5'- gGCGGCCCggaggccggaucgGCGGCGCgGGCGGCCuccggguucuucggGCCCg -3'
miRNA:   3'- gCGCUGGG-------------UGUCGCG-CUGCCGG--------------CGGG- -5'
21606 5' -63.5 NC_004812.1 + 56023 0.76 0.163626
Target:  5'- gGCGGCCgAagagcgcCAGCuCGACGGCCGCCa -3'
miRNA:   3'- gCGCUGGgU-------GUCGcGCUGCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 99124 0.77 0.131083
Target:  5'- gGCcagGACCCGCAgGUGgccgaagacgucucCGACGGCCGCCCg -3'
miRNA:   3'- gCG---CUGGGUGU-CGC--------------GCUGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 139100 0.77 0.132043
Target:  5'- cCGCGACCgAgGGCGCGuCGGCgaCGUCCg -3'
miRNA:   3'- -GCGCUGGgUgUCGCGCuGCCG--GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 106512 0.77 0.132043
Target:  5'- cCGCGGCgCGgGGCGcCGGCGGCCGCg- -3'
miRNA:   3'- -GCGCUGgGUgUCGC-GCUGCCGGCGgg -5'
21606 5' -63.5 NC_004812.1 + 115388 0.77 0.13529
Target:  5'- gGCGGCgaCCGCAGCGCGuagucGCCGCCCc -3'
miRNA:   3'- gCGCUG--GGUGUCGCGCugc--CGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 151705 0.77 0.138611
Target:  5'- aGCGAgCgGCGGCGCGcGCGcGCCGCCg -3'
miRNA:   3'- gCGCUgGgUGUCGCGC-UGC-CGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 1681 0.77 0.138611
Target:  5'- cCGCGGCCCGCc-CGCGGCGGgggaUGCCCu -3'
miRNA:   3'- -GCGCUGGGUGucGCGCUGCCg---GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 32846 0.77 0.13996
Target:  5'- gGCGGCCCcCAGgGCGGCcagcggcaccccggaGGCCGCCa -3'
miRNA:   3'- gCGCUGGGuGUCgCGCUG---------------CCGGCGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.