miRNA display CGI


Results 21 - 40 of 1515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21606 5' -63.5 NC_004812.1 + 39254 0.81 0.076616
Target:  5'- gCGCGGccgcCCCACcGCGuCGGCGGCCGCCg -3'
miRNA:   3'- -GCGCU----GGGUGuCGC-GCUGCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 34777 0.81 0.072862
Target:  5'- cCGCGGCCCGCAaGCGCccGGCcuccgccuccgaGGCCGCCCc -3'
miRNA:   3'- -GCGCUGGGUGU-CGCG--CUG------------CCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 553 0.82 0.064234
Target:  5'- gGCGACgCGCcGCGCGACGcCCGCCCg -3'
miRNA:   3'- gCGCUGgGUGuCGCGCUGCcGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 81732 0.85 0.042769
Target:  5'- gGCGAgaCGCGGCGCcgGACGGCCGCCCu -3'
miRNA:   3'- gCGCUggGUGUCGCG--CUGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 84641 0.79 0.098329
Target:  5'- gCGCGugagccuCCCGCGGCGCGcgucgcggcAgGGCCGCCCc -3'
miRNA:   3'- -GCGCu------GGGUGUCGCGC---------UgCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 83180 0.8 0.082597
Target:  5'- gCGCGGCCCcggaGCucgcggcgggaGGCGCGGCGGCCGCgCu -3'
miRNA:   3'- -GCGCUGGG----UG-----------UCGCGCUGCCGGCGgG- -5'
21606 5' -63.5 NC_004812.1 + 107707 0.81 0.071052
Target:  5'- gCGUGGCCCGCGagcaccccGCGCucguaGCGGCCGCCCg -3'
miRNA:   3'- -GCGCUGGGUGU--------CGCGc----UGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 27621 0.85 0.041689
Target:  5'- cCGCGGCCCGCcGCGCuGACGGCgcgacCGCCCg -3'
miRNA:   3'- -GCGCUGGGUGuCGCG-CUGCCG-----GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 20542 0.8 0.082597
Target:  5'- gGcCGACCUGCGGCGCG-UGGCCGCgCCg -3'
miRNA:   3'- gC-GCUGGGUGUCGCGCuGCCGGCG-GG- -5'
21606 5' -63.5 NC_004812.1 + 124002 0.87 0.027933
Target:  5'- uGCGacGCCCGCGGCGCcuacgacccguacacGACGGCCGCCCu -3'
miRNA:   3'- gCGC--UGGGUGUCGCG---------------CUGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 111080 0.81 0.071052
Target:  5'- gCGCG-CCUACuGGCGCGACGGCgaGCCCu -3'
miRNA:   3'- -GCGCuGGGUG-UCGCGCUGCCGg-CGGG- -5'
21606 5' -63.5 NC_004812.1 + 2228 0.81 0.076616
Target:  5'- cCGCGGCCCagcgcacgcGCGGCGCGGCGGCgggGUCCg -3'
miRNA:   3'- -GCGCUGGG---------UGUCGCGCUGCCGg--CGGG- -5'
21606 5' -63.5 NC_004812.1 + 46895 0.82 0.069285
Target:  5'- aGCGcCCCgggGCgGGCGCGGCGGCCGCCg -3'
miRNA:   3'- gCGCuGGG---UG-UCGCGCUGCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 62350 0.82 0.064234
Target:  5'- gCGCGcGCCCGCGGCGCGugGGUCGgcgcgaacCCCa -3'
miRNA:   3'- -GCGC-UGGGUGUCGCGCugCCGGC--------GGG- -5'
21606 5' -63.5 NC_004812.1 + 2629 0.83 0.055178
Target:  5'- cCGCGGCCCA-GGCGCGGCGGCgGCgCg -3'
miRNA:   3'- -GCGCUGGGUgUCGCGCUGCCGgCGgG- -5'
21606 5' -63.5 NC_004812.1 + 45203 0.84 0.043875
Target:  5'- gCGCGGCCgGCAGCGaGACGGCgUGCCCg -3'
miRNA:   3'- -GCGCUGGgUGUCGCgCUGCCG-GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 125828 0.79 0.105906
Target:  5'- cCGCGGcCCCGCAgGCGgGGcCGGCuCGCCCg -3'
miRNA:   3'- -GCGCU-GGGUGU-CGCgCU-GCCG-GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 149329 0.79 0.098329
Target:  5'- gGCGGCCuCACA-CGCGGCcGCCGCCCc -3'
miRNA:   3'- gCGCUGG-GUGUcGCGCUGcCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 167 0.8 0.095682
Target:  5'- cCGCGGCCCGCcGCGCGuuuauuuucgcgcGCGcGCCGCCg -3'
miRNA:   3'- -GCGCUGGGUGuCGCGC-------------UGC-CGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 84703 0.8 0.084688
Target:  5'- aGCG-CCCGCGGCGCcGC-GCCGCCCg -3'
miRNA:   3'- gCGCuGGGUGUCGCGcUGcCGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.