miRNA display CGI


Results 61 - 80 of 1515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21606 5' -63.5 NC_004812.1 + 149329 0.79 0.098329
Target:  5'- gGCGGCCuCACA-CGCGGCcGCCGCCCc -3'
miRNA:   3'- gCGCUGG-GUGUcGCGCUGcCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 49149 0.79 0.106956
Target:  5'- aGCgGGCCCugGGgaucggcggcgagucCGCGACGGCCGCCg -3'
miRNA:   3'- gCG-CUGGGugUC---------------GCGCUGCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 148276 0.84 0.04501
Target:  5'- cCGCGcCCgGCAGCGCGGCGGCgGCgCCg -3'
miRNA:   3'- -GCGCuGGgUGUCGCGCUGCCGgCG-GG- -5'
21606 5' -63.5 NC_004812.1 + 32128 0.82 0.059389
Target:  5'- cCGCGggggcuccuccccGCCCggGCGGCGCcGCGGCCGCCCg -3'
miRNA:   3'- -GCGC-------------UGGG--UGUCGCGcUGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 26939 0.82 0.064234
Target:  5'- cCGCGggcucaucGCCgCGCAGCGCcgccuGGCGGCCGCCCu -3'
miRNA:   3'- -GCGC--------UGG-GUGUCGCG-----CUGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 137467 0.82 0.069285
Target:  5'- cCGCGcccCCCGCGGCGC--UGGCCGCCCa -3'
miRNA:   3'- -GCGCu--GGGUGUCGCGcuGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 110314 0.81 0.072862
Target:  5'- gCGCGGCCCGC--CGCGGCcuccGGCCGCCCc -3'
miRNA:   3'- -GCGCUGGGUGucGCGCUG----CCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 2228 0.81 0.076616
Target:  5'- cCGCGGCCCagcgcacgcGCGGCGCGGCGGCgggGUCCg -3'
miRNA:   3'- -GCGCUGGG---------UGUCGCGCUGCCGg--CGGG- -5'
21606 5' -63.5 NC_004812.1 + 83180 0.8 0.082597
Target:  5'- gCGCGGCCCcggaGCucgcggcgggaGGCGCGGCGGCCGCgCu -3'
miRNA:   3'- -GCGCUGGG----UG-----------UCGCGCUGCCGGCGgG- -5'
21606 5' -63.5 NC_004812.1 + 48661 0.8 0.093566
Target:  5'- cCGCGcCUCGCcGCGCGAUGGCCGgCCu -3'
miRNA:   3'- -GCGCuGGGUGuCGCGCUGCCGGCgGG- -5'
21606 5' -63.5 NC_004812.1 + 5242 0.76 0.167971
Target:  5'- uCGCGGCCguCGgGGCGCGccgaguCGGCCGCCg -3'
miRNA:   3'- -GCGCUGG--GUgUCGCGCu-----GCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 46692 0.76 0.167971
Target:  5'- aGUGGCCC--AGCGCGACGugcaGCCGCUCg -3'
miRNA:   3'- gCGCUGGGugUCGCGCUGC----CGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 130714 0.78 0.11319
Target:  5'- cCGCGGCgCugGGCGCGGgcgccgcggagggcCGGCCGCCg -3'
miRNA:   3'- -GCGCUGgGugUCGCGCU--------------GCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 107198 0.78 0.114028
Target:  5'- gGCGGCCCggggccACGGCGCG--GGCCGCCUg -3'
miRNA:   3'- gCGCUGGG------UGUCGCGCugCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 156141 0.78 0.128868
Target:  5'- gCGCGugCgCACgcaGGCGCGcCGGCgGCCCg -3'
miRNA:   3'- -GCGCugG-GUG---UCGCGCuGCCGgCGGG- -5'
21606 5' -63.5 NC_004812.1 + 132102 0.77 0.132043
Target:  5'- cCGCagccCCCGCGGCGCGGgGGCCcCCCg -3'
miRNA:   3'- -GCGcu--GGGUGUCGCGCUgCCGGcGGG- -5'
21606 5' -63.5 NC_004812.1 + 51628 0.77 0.138611
Target:  5'- gGCGGCCCGCGGcCGCGuGCGcGCCgagaGCCCc -3'
miRNA:   3'- gCGCUGGGUGUC-GCGC-UGC-CGG----CGGG- -5'
21606 5' -63.5 NC_004812.1 + 56446 0.77 0.145477
Target:  5'- gGCGGgCCugGCGGCGCGAUGagccccgccccGCCGCCCg -3'
miRNA:   3'- gCGCUgGG--UGUCGCGCUGC-----------CGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 148676 0.77 0.152652
Target:  5'- aCGCGcCCCcCGGcCGCGcCGGCgCGCCCg -3'
miRNA:   3'- -GCGCuGGGuGUC-GCGCuGCCG-GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 38973 0.76 0.156358
Target:  5'- cCGCGAcCCCGCcGCGCc-CGGCgGCCCg -3'
miRNA:   3'- -GCGCU-GGGUGuCGCGcuGCCGgCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.