Results 81 - 100 of 1515 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21606 | 5' | -63.5 | NC_004812.1 | + | 15966 | 0.78 | 0.114028 |
Target: 5'- gCGUGGCgCCGCcGCGCGGCGGCgCGUCUa -3' miRNA: 3'- -GCGCUG-GGUGuCGCGCUGCCG-GCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 54627 | 0.78 | 0.125764 |
Target: 5'- gCGCGACCCcccgcGCGG-GCGGCGGgCGUCCg -3' miRNA: 3'- -GCGCUGGG-----UGUCgCGCUGCCgGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 41138 | 0.77 | 0.131723 |
Target: 5'- gCGCGGCCgCACGcGCGCGGCGagcccagcggcgcGCCGCCa -3' miRNA: 3'- -GCGCUGG-GUGU-CGCGCUGC-------------CGGCGGg -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 106425 | 0.77 | 0.13529 |
Target: 5'- cCGCGGCgcucgaagaUCGCGGCGCuGGCGGCCGUCUc -3' miRNA: 3'- -GCGCUG---------GGUGUCGCG-CUGCCGGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 155347 | 0.77 | 0.141663 |
Target: 5'- cCGCGGCCgGCGGaccaacgggcggcCGCGGC-GCCGCCCg -3' miRNA: 3'- -GCGCUGGgUGUC-------------GCGCUGcCGGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 148676 | 0.77 | 0.152652 |
Target: 5'- aCGCGcCCCcCGGcCGCGcCGGCgCGCCCg -3' miRNA: 3'- -GCGCuGGGuGUC-GCGCuGCCG-GCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 38973 | 0.76 | 0.156358 |
Target: 5'- cCGCGAcCCCGCcGCGCc-CGGCgGCCCg -3' miRNA: 3'- -GCGCU-GGGUGuCGCGcuGCCGgCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 48661 | 0.8 | 0.093566 |
Target: 5'- cCGCGcCUCGCcGCGCGAUGGCCGgCCu -3' miRNA: 3'- -GCGCuGGGUGuCGCGCUGCCGGCgGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 83180 | 0.8 | 0.082597 |
Target: 5'- gCGCGGCCCcggaGCucgcggcgggaGGCGCGGCGGCCGCgCu -3' miRNA: 3'- -GCGCUGGG----UG-----------UCGCGCUGCCGGCGgG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 2228 | 0.81 | 0.076616 |
Target: 5'- cCGCGGCCCagcgcacgcGCGGCGCGGCGGCgggGUCCg -3' miRNA: 3'- -GCGCUGGG---------UGUCGCGCUGCCGg--CGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 56565 | 0.76 | 0.172011 |
Target: 5'- gGUGACCCccgcuCGGaCGCG-CGGCCGCCa -3' miRNA: 3'- gCGCUGGGu----GUC-GCGCuGCCGGCGGg -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 82714 | 0.76 | 0.176137 |
Target: 5'- gCGCGACUCgGCGGC-CG-CGGCCGCCg -3' miRNA: 3'- -GCGCUGGG-UGUCGcGCuGCCGGCGGg -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 80311 | 0.75 | 0.179926 |
Target: 5'- gGCGACCgCGCcGCGCugcuggaGGCGGCCGCgCg -3' miRNA: 3'- gCGCUGG-GUGuCGCG-------CUGCCGGCGgG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 156096 | 0.75 | 0.180351 |
Target: 5'- gCGCgGGCCCGCcccGGcCGCGGCGGCCGUg- -3' miRNA: 3'- -GCG-CUGGGUG---UC-GCGCUGCCGGCGgg -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 4353 | 0.75 | 0.184654 |
Target: 5'- gGCGGCUCAUGGCGaCGGCGGCgGCg- -3' miRNA: 3'- gCGCUGGGUGUCGC-GCUGCCGgCGgg -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 148276 | 0.84 | 0.04501 |
Target: 5'- cCGCGcCCgGCAGCGCGGCGGCgGCgCCg -3' miRNA: 3'- -GCGCuGGgUGUCGCGCUGCCGgCG-GG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 32128 | 0.82 | 0.059389 |
Target: 5'- cCGCGggggcuccuccccGCCCggGCGGCGCcGCGGCCGCCCg -3' miRNA: 3'- -GCGC-------------UGGG--UGUCGCGcUGCCGGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 26939 | 0.82 | 0.064234 |
Target: 5'- cCGCGggcucaucGCCgCGCAGCGCcgccuGGCGGCCGCCCu -3' miRNA: 3'- -GCGC--------UGG-GUGUCGCG-----CUGCCGGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 137467 | 0.82 | 0.069285 |
Target: 5'- cCGCGcccCCCGCGGCGC--UGGCCGCCCa -3' miRNA: 3'- -GCGCu--GGGUGUCGCGcuGCCGGCGGG- -5' |
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21606 | 5' | -63.5 | NC_004812.1 | + | 110314 | 0.81 | 0.072862 |
Target: 5'- gCGCGGCCCGC--CGCGGCcuccGGCCGCCCc -3' miRNA: 3'- -GCGCUGGGUGucGCGCUG----CCGGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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