miRNA display CGI


Results 101 - 120 of 1515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21606 5' -63.5 NC_004812.1 + 62464 0.75 0.180351
Target:  5'- -aCGaACCC-CAGCGCGGCGGCCugcGUCCa -3'
miRNA:   3'- gcGC-UGGGuGUCGCGCUGCCGG---CGGG- -5'
21606 5' -63.5 NC_004812.1 + 136311 0.75 0.184654
Target:  5'- gCGCG-CgCGCuGCGcCGGCGcGCCGCCCa -3'
miRNA:   3'- -GCGCuGgGUGuCGC-GCUGC-CGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 57974 0.75 0.189047
Target:  5'- uCGCG-CCCgggcgcagcGCGGcCGCGACGGCCGCg- -3'
miRNA:   3'- -GCGCuGGG---------UGUC-GCGCUGCCGGCGgg -5'
21606 5' -63.5 NC_004812.1 + 122913 0.75 0.193533
Target:  5'- aGCGGCCgACGGcCGCGACG-CCgguGCCCg -3'
miRNA:   3'- gCGCUGGgUGUC-GCGCUGCcGG---CGGG- -5'
21606 5' -63.5 NC_004812.1 + 120765 0.75 0.198111
Target:  5'- aGCGACCCcgcgcugcugcGCAaguacCGCGACGGCgaCGCCCa -3'
miRNA:   3'- gCGCUGGG-----------UGUc----GCGCUGCCG--GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 106425 0.77 0.13529
Target:  5'- cCGCGGCgcucgaagaUCGCGGCGCuGGCGGCCGUCUc -3'
miRNA:   3'- -GCGCUG---------GGUGUCGCG-CUGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 41138 0.77 0.131723
Target:  5'- gCGCGGCCgCACGcGCGCGGCGagcccagcggcgcGCCGCCa -3'
miRNA:   3'- -GCGCUGG-GUGU-CGCGCUGC-------------CGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 148276 0.84 0.04501
Target:  5'- cCGCGcCCgGCAGCGCGGCGGCgGCgCCg -3'
miRNA:   3'- -GCGCuGGgUGUCGCGCUGCCGgCG-GG- -5'
21606 5' -63.5 NC_004812.1 + 32128 0.82 0.059389
Target:  5'- cCGCGggggcuccuccccGCCCggGCGGCGCcGCGGCCGCCCg -3'
miRNA:   3'- -GCGC-------------UGGG--UGUCGCGcUGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 26939 0.82 0.064234
Target:  5'- cCGCGggcucaucGCCgCGCAGCGCcgccuGGCGGCCGCCCu -3'
miRNA:   3'- -GCGC--------UGG-GUGUCGCG-----CUGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 137467 0.82 0.069285
Target:  5'- cCGCGcccCCCGCGGCGC--UGGCCGCCCa -3'
miRNA:   3'- -GCGCu--GGGUGUCGCGcuGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 110314 0.81 0.072862
Target:  5'- gCGCGGCCCGC--CGCGGCcuccGGCCGCCCc -3'
miRNA:   3'- -GCGCUGGGUGucGCGCUG----CCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 2228 0.81 0.076616
Target:  5'- cCGCGGCCCagcgcacgcGCGGCGCGGCGGCgggGUCCg -3'
miRNA:   3'- -GCGCUGGG---------UGUCGCGCUGCCGg--CGGG- -5'
21606 5' -63.5 NC_004812.1 + 83180 0.8 0.082597
Target:  5'- gCGCGGCCCcggaGCucgcggcgggaGGCGCGGCGGCCGCgCu -3'
miRNA:   3'- -GCGCUGGG----UG-----------UCGCGCUGCCGGCGgG- -5'
21606 5' -63.5 NC_004812.1 + 48661 0.8 0.093566
Target:  5'- cCGCGcCUCGCcGCGCGAUGGCCGgCCu -3'
miRNA:   3'- -GCGCuGGGUGuCGCGCUGCCGGCgGG- -5'
21606 5' -63.5 NC_004812.1 + 73717 0.79 0.100547
Target:  5'- cCGC-ACCCGCGaggagguGCGCGuguCGGCCGCCCu -3'
miRNA:   3'- -GCGcUGGGUGU-------CGCGCu--GCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 43841 0.79 0.106956
Target:  5'- gCGCGGCUCGCGGCGcCGACGuccgggcgcggcggcGCCGCCg -3'
miRNA:   3'- -GCGCUGGGUGUCGC-GCUGC---------------CGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 9122 0.79 0.111258
Target:  5'- cCG-GACCCccGCGGCGCcACGGUCGCCCu -3'
miRNA:   3'- -GCgCUGGG--UGUCGCGcUGCCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 15966 0.78 0.114028
Target:  5'- gCGUGGCgCCGCcGCGCGGCGGCgCGUCUa -3'
miRNA:   3'- -GCGCUG-GGUGuCGCGCUGCCG-GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 54627 0.78 0.125764
Target:  5'- gCGCGACCCcccgcGCGG-GCGGCGGgCGUCCg -3'
miRNA:   3'- -GCGCUGGG-----UGUCgCGCUGCCgGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.