miRNA display CGI


Results 21 - 40 of 1515 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21606 5' -63.5 NC_004812.1 + 86858 0.66 0.633794
Target:  5'- gCGCGAgcgcacuggugcCCCcCGGUGCcgGACcGCCGCCUu -3'
miRNA:   3'- -GCGCU------------GGGuGUCGCG--CUGcCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 8311 0.66 0.633794
Target:  5'- aGCGAgCgcaGCAGCGggcCGGCGccGCCGCCg -3'
miRNA:   3'- gCGCUgGg--UGUCGC---GCUGC--CGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 12426 0.66 0.633794
Target:  5'- uCGCGugCUuccaGGuCGUcucGAUGGCCGCCg -3'
miRNA:   3'- -GCGCugGGug--UC-GCG---CUGCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 77501 0.66 0.633794
Target:  5'- gGCGAUCC---GCGCGGCacGCCGCUa -3'
miRNA:   3'- gCGCUGGGuguCGCGCUGc-CGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 104303 0.66 0.633794
Target:  5'- gGCGGgCgACGGCgGgGACGG-CGCCUc -3'
miRNA:   3'- gCGCUgGgUGUCG-CgCUGCCgGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 130285 0.66 0.633794
Target:  5'- cCGgGACCCccgaGCGGcCGCGAaccccGCCGaCCCc -3'
miRNA:   3'- -GCgCUGGG----UGUC-GCGCUgc---CGGC-GGG- -5'
21606 5' -63.5 NC_004812.1 + 47677 0.66 0.633794
Target:  5'- cCGacaGACCCACGacccccGgGCGAuuacccgaccCGGgCGCCCg -3'
miRNA:   3'- -GCg--CUGGGUGU------CgCGCU----------GCCgGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 119292 0.66 0.633794
Target:  5'- gGCGGgCUguACGGCGCGccguacccCGGCguCGCCCu -3'
miRNA:   3'- gCGCUgGG--UGUCGCGCu-------GCCG--GCGGG- -5'
21606 5' -63.5 NC_004812.1 + 38741 0.66 0.633794
Target:  5'- gGCGGCUCucuCGGgGCGGgGGUCGgUCg -3'
miRNA:   3'- gCGCUGGGu--GUCgCGCUgCCGGCgGG- -5'
21606 5' -63.5 NC_004812.1 + 121300 0.66 0.633794
Target:  5'- gGCGcuucCCCGCGgugaucGCGCGGguGCUGCCCa -3'
miRNA:   3'- gCGCu---GGGUGU------CGCGCUgcCGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 5458 0.66 0.633794
Target:  5'- uCGCGcccGCCCACcagggccacgggGGgGCGAgGGUCaCCCa -3'
miRNA:   3'- -GCGC---UGGGUG------------UCgCGCUgCCGGcGGG- -5'
21606 5' -63.5 NC_004812.1 + 155213 0.66 0.633794
Target:  5'- gGCGGCgagagggggCGCGGCGCGggGCGGgCCGUCg -3'
miRNA:   3'- gCGCUGg--------GUGUCGCGC--UGCC-GGCGGg -5'
21606 5' -63.5 NC_004812.1 + 87716 0.66 0.633794
Target:  5'- gGCGACCgCgagcgggagGCGGCGCGGgcgccggGGCCGCggaCCg -3'
miRNA:   3'- gCGCUGG-G---------UGUCGCGCUg------CCGGCG---GG- -5'
21606 5' -63.5 NC_004812.1 + 123683 0.66 0.633794
Target:  5'- -aCGACgUcCGGCGCGAgccCGGaCGCCCg -3'
miRNA:   3'- gcGCUGgGuGUCGCGCU---GCCgGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 101440 0.66 0.633794
Target:  5'- gGgGGCCgGgGGCGCcggcaccgaGugGGCCGUCa -3'
miRNA:   3'- gCgCUGGgUgUCGCG---------CugCCGGCGGg -5'
21606 5' -63.5 NC_004812.1 + 51132 0.66 0.633794
Target:  5'- aCGCGcCCUACuaccccggggaGGCGCG-CGccCCGCCCc -3'
miRNA:   3'- -GCGCuGGGUG-----------UCGCGCuGCc-GGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 36359 0.66 0.633794
Target:  5'- uCGCGcccGCCCACcagggccacgggGGgGCGAgGGUCaCCCa -3'
miRNA:   3'- -GCGC---UGGGUG------------UCgCGCUgCCGGcGGG- -5'
21606 5' -63.5 NC_004812.1 + 1562 0.66 0.633794
Target:  5'- ----cCCUAC-GCGCG-CGaGCCGCCCg -3'
miRNA:   3'- gcgcuGGGUGuCGCGCuGC-CGGCGGG- -5'
21606 5' -63.5 NC_004812.1 + 67203 0.66 0.633794
Target:  5'- gGUGA-CCGCGGCG--GCGGC-GCCCg -3'
miRNA:   3'- gCGCUgGGUGUCGCgcUGCCGgCGGG- -5'
21606 5' -63.5 NC_004812.1 + 155574 0.66 0.633794
Target:  5'- aGgGGCgCGC-GCG-GGCGGCCggGCCCu -3'
miRNA:   3'- gCgCUGgGUGuCGCgCUGCCGG--CGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.