miRNA display CGI


Results 1 - 20 of 287 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21611 3' -57.2 NC_004812.1 + 145236 0.66 0.892208
Target:  5'- -gUGGAgcgauccccgccccgGUACCGCCccccucCCGuCGAGCCc -3'
miRNA:   3'- uaGCCU---------------CAUGGCGGau----GGCuGCUCGG- -5'
21611 3' -57.2 NC_004812.1 + 17056 0.66 0.889557
Target:  5'- cUCGGucccgGCCGCC-GCgGACGcGCCc -3'
miRNA:   3'- uAGCCuca--UGGCGGaUGgCUGCuCGG- -5'
21611 3' -57.2 NC_004812.1 + 33034 0.66 0.889557
Target:  5'- cUCGGcc-GCCGCCc-CCGGCG-GCCc -3'
miRNA:   3'- uAGCCucaUGGCGGauGGCUGCuCGG- -5'
21611 3' -57.2 NC_004812.1 + 54652 0.66 0.889557
Target:  5'- -aCGGGGgucGCCGCCgcgggGCCcaGCG-GCCg -3'
miRNA:   3'- uaGCCUCa--UGGCGGa----UGGc-UGCuCGG- -5'
21611 3' -57.2 NC_004812.1 + 24909 0.66 0.889557
Target:  5'- cGUCGaGGGUGCggUGCCUuCCGAUGAagGUCa -3'
miRNA:   3'- -UAGC-CUCAUG--GCGGAuGGCUGCU--CGG- -5'
21611 3' -57.2 NC_004812.1 + 130580 0.66 0.889557
Target:  5'- -cCGGGG-GCC-CCUGgaCGugGAGCCc -3'
miRNA:   3'- uaGCCUCaUGGcGGAUg-GCugCUCGG- -5'
21611 3' -57.2 NC_004812.1 + 97410 0.66 0.889557
Target:  5'- -cUGGAc--CCGCacGCCGGCGGGCCc -3'
miRNA:   3'- uaGCCUcauGGCGgaUGGCUGCUCGG- -5'
21611 3' -57.2 NC_004812.1 + 86718 0.66 0.889557
Target:  5'- uAUCGGAGgaGCgGCCggaCGACGAcggcgaccagcGCCg -3'
miRNA:   3'- -UAGCCUCa-UGgCGGaugGCUGCU-----------CGG- -5'
21611 3' -57.2 NC_004812.1 + 108320 0.66 0.889557
Target:  5'- cUCGGcc-ACCGCCgcgGCCGucuccaGGGCCu -3'
miRNA:   3'- uAGCCucaUGGCGGa--UGGCug----CUCGG- -5'
21611 3' -57.2 NC_004812.1 + 78915 0.66 0.889557
Target:  5'- uUCGGcuGGaacaGCUGCggGCCGACGGGCa -3'
miRNA:   3'- uAGCC--UCa---UGGCGgaUGGCUGCUCGg -5'
21611 3' -57.2 NC_004812.1 + 100635 0.66 0.889557
Target:  5'- uUCGGcg-ACCGCCUGgCGGCGcuggacauGGUCg -3'
miRNA:   3'- uAGCCucaUGGCGGAUgGCUGC--------UCGG- -5'
21611 3' -57.2 NC_004812.1 + 48046 0.66 0.889557
Target:  5'- -gCGGGGcGCgCGCC-ACCaGCGAGCg -3'
miRNA:   3'- uaGCCUCaUG-GCGGaUGGcUGCUCGg -5'
21611 3' -57.2 NC_004812.1 + 66745 0.66 0.887545
Target:  5'- cGUCGGAGcaGCgCGCCgGCCucgcgcacgaauguGGCGAGCg -3'
miRNA:   3'- -UAGCCUCa-UG-GCGGaUGG--------------CUGCUCGg -5'
21611 3' -57.2 NC_004812.1 + 116759 0.66 0.885514
Target:  5'- -gCGGAGccccggccccccgcACCGCCUACgGGCacgcGGCCg -3'
miRNA:   3'- uaGCCUCa-------------UGGCGGAUGgCUGc---UCGG- -5'
21611 3' -57.2 NC_004812.1 + 10845 0.66 0.882774
Target:  5'- -cCGGcacccccCCGCgCgacgACCGACGAGCCc -3'
miRNA:   3'- uaGCCucau---GGCG-Ga---UGGCUGCUCGG- -5'
21611 3' -57.2 NC_004812.1 + 106393 0.66 0.882774
Target:  5'- uUCGGGGUcGCCGCUcgGCCucACG-GCCc -3'
miRNA:   3'- uAGCCUCA-UGGCGGa-UGGc-UGCuCGG- -5'
21611 3' -57.2 NC_004812.1 + 105045 0.66 0.882774
Target:  5'- gAUgGGAGgcGCCGCUccgGCCG-CGGGCg -3'
miRNA:   3'- -UAgCCUCa-UGGCGGa--UGGCuGCUCGg -5'
21611 3' -57.2 NC_004812.1 + 12365 0.66 0.882774
Target:  5'- -gCGGGGgGCgCGCCcgGCCGcGCG-GCCg -3'
miRNA:   3'- uaGCCUCaUG-GCGGa-UGGC-UGCuCGG- -5'
21611 3' -57.2 NC_004812.1 + 86573 0.66 0.882774
Target:  5'- gGUCGGcgAGcgcccCCGCCUGuCCGcggaugaaguuGCGGGCCg -3'
miRNA:   3'- -UAGCC--UCau---GGCGGAU-GGC-----------UGCUCGG- -5'
21611 3' -57.2 NC_004812.1 + 59639 0.66 0.882774
Target:  5'- --gGGAGcgGCCGCgggggaugagACgGACGGGCCg -3'
miRNA:   3'- uagCCUCa-UGGCGga--------UGgCUGCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.