miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21611 5' -53.9 NC_004812.1 + 134223 0.66 0.975663
Target:  5'- cGGAGUUuuacccagaCGCUGGCGGcgcGCUUUgCCGCGu -3'
miRNA:   3'- -CCUCAG---------GCGGUUGCU---UGAGAaGGCGC- -5'
21611 5' -53.9 NC_004812.1 + 2258 0.66 0.975663
Target:  5'- cGGGGUCCGCgu-CG-GCg--UCCGCGc -3'
miRNA:   3'- -CCUCAGGCGguuGCuUGagaAGGCGC- -5'
21611 5' -53.9 NC_004812.1 + 72909 0.66 0.975663
Target:  5'- cGAGggaUGCCGACGAggACUCcgUUCUGCu -3'
miRNA:   3'- cCUCag-GCGGUUGCU--UGAG--AAGGCGc -5'
21611 5' -53.9 NC_004812.1 + 127766 0.66 0.975663
Target:  5'- cGGGGUCCGCgu-CG-GCg--UCCGCGc -3'
miRNA:   3'- -CCUCAGGCGguuGCuUGagaAGGCGC- -5'
21611 5' -53.9 NC_004812.1 + 113182 0.66 0.975663
Target:  5'- ----cCCGCCGGCGAGauaaugUCCGCGc -3'
miRNA:   3'- ccucaGGCGGUUGCUUgaga--AGGCGC- -5'
21611 5' -53.9 NC_004812.1 + 67244 0.66 0.975663
Target:  5'- gGGAG-CCGCCGG-GGACUgCggcgUCUGUGg -3'
miRNA:   3'- -CCUCaGGCGGUUgCUUGA-Ga---AGGCGC- -5'
21611 5' -53.9 NC_004812.1 + 26928 0.66 0.975663
Target:  5'- cGGGUacggCGCC-GCGGGCUCaucgCCGCGc -3'
miRNA:   3'- cCUCAg---GCGGuUGCUUGAGaa--GGCGC- -5'
21611 5' -53.9 NC_004812.1 + 39095 0.66 0.975663
Target:  5'- cGGGGUCCgGCCGA-GAGCgg--CCGgGg -3'
miRNA:   3'- -CCUCAGG-CGGUUgCUUGagaaGGCgC- -5'
21611 5' -53.9 NC_004812.1 + 59200 0.66 0.975663
Target:  5'- aGGGcCCGCCGGCGuGCgggUCCaGCGc -3'
miRNA:   3'- cCUCaGGCGGUUGCuUGagaAGG-CGC- -5'
21611 5' -53.9 NC_004812.1 + 8194 0.66 0.975663
Target:  5'- cGGGGUCCgGCCGA-GAGCgg--CCGgGg -3'
miRNA:   3'- -CCUCAGG-CGGUUgCUUGagaaGGCgC- -5'
21611 5' -53.9 NC_004812.1 + 9776 0.66 0.975663
Target:  5'- aGGuGUUaggUGUUAGCGAACUCUUCCu-- -3'
miRNA:   3'- -CCuCAG---GCGGUUGCUUGAGAAGGcgc -5'
21611 5' -53.9 NC_004812.1 + 83315 0.66 0.975411
Target:  5'- cGGAGacggaCCGCCAGCGGuccguccACUCggugaCGCa -3'
miRNA:   3'- -CCUCa----GGCGGUUGCU-------UGAGaag--GCGc -5'
21611 5' -53.9 NC_004812.1 + 130458 0.66 0.973054
Target:  5'- uGGAGggCgGCCGGCGGGCgg--CCgGCGg -3'
miRNA:   3'- -CCUCa-GgCGGUUGCUUGagaaGG-CGC- -5'
21611 5' -53.9 NC_004812.1 + 134175 0.66 0.973054
Target:  5'- cGGAGugcUCCGgaGACGAGC---UCCGCGa -3'
miRNA:   3'- -CCUC---AGGCggUUGCUUGagaAGGCGC- -5'
21611 5' -53.9 NC_004812.1 + 17709 0.66 0.973054
Target:  5'- cGGAcaGaCCGaCCAGCaGGCUCUgcggcgCCGCGg -3'
miRNA:   3'- -CCU--CaGGC-GGUUGcUUGAGAa-----GGCGC- -5'
21611 5' -53.9 NC_004812.1 + 80600 0.66 0.973054
Target:  5'- cGGGGcCCGgCuGgGGGCUCgguggggggUCCGCGg -3'
miRNA:   3'- -CCUCaGGCgGuUgCUUGAGa--------AGGCGC- -5'
21611 5' -53.9 NC_004812.1 + 72433 0.66 0.973054
Target:  5'- cGGu-UUCGCCcACGGGCUCgUCCGgGa -3'
miRNA:   3'- -CCucAGGCGGuUGCUUGAGaAGGCgC- -5'
21611 5' -53.9 NC_004812.1 + 2141 0.66 0.973054
Target:  5'- gGGAGgccCCGCgGGCGgGGCUCgcggCgGCGg -3'
miRNA:   3'- -CCUCa--GGCGgUUGC-UUGAGaa--GgCGC- -5'
21611 5' -53.9 NC_004812.1 + 128670 0.66 0.973054
Target:  5'- -cGGUCCggugGCCGGCGG--UCUUCCGgGa -3'
miRNA:   3'- ccUCAGG----CGGUUGCUugAGAAGGCgC- -5'
21611 5' -53.9 NC_004812.1 + 30712 0.66 0.973054
Target:  5'- uGGAGUUgG-CGACGGACgccaCggcgUCCGCGc -3'
miRNA:   3'- -CCUCAGgCgGUUGCUUGa---Ga---AGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.