miRNA display CGI


Results 1 - 20 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21615 3' -57.1 NC_004812.1 + 7776 0.66 0.889499
Target:  5'- -uGCGCG-CCgugcgGCGCGGCCGUGu -3'
miRNA:   3'- uuUGCGCuGGacca-UGCGCUGGCGCu -5'
21615 3' -57.1 NC_004812.1 + 53264 0.66 0.889499
Target:  5'- --uUGCGACCUGGagcagGCGCG-CCaGCu- -3'
miRNA:   3'- uuuGCGCUGGACCa----UGCGCuGG-CGcu -5'
21615 3' -57.1 NC_004812.1 + 100893 0.66 0.889499
Target:  5'- --cCGCGGCCcccgaGGcgggGCGCGgagacgGCCGCGAg -3'
miRNA:   3'- uuuGCGCUGGa----CCa---UGCGC------UGGCGCU- -5'
21615 3' -57.1 NC_004812.1 + 32483 0.66 0.889499
Target:  5'- gAGGCGCGGCCcgucGGcgGCGU-ACCGCGu -3'
miRNA:   3'- -UUUGCGCUGGa---CCa-UGCGcUGGCGCu -5'
21615 3' -57.1 NC_004812.1 + 38677 0.66 0.889499
Target:  5'- -uGCGCG-CCgugcgGCGCGGCCGUGu -3'
miRNA:   3'- uuUGCGCuGGacca-UGCGCUGGCGCu -5'
21615 3' -57.1 NC_004812.1 + 27250 0.66 0.889499
Target:  5'- -cGCGCGACgcgCUGGUGCucauGCGcCUGCGc -3'
miRNA:   3'- uuUGCGCUG---GACCAUG----CGCuGGCGCu -5'
21615 3' -57.1 NC_004812.1 + 142616 0.66 0.889499
Target:  5'- cAACGCGcuguaucacacGCCgcaGUACGCGGCCGgGc -3'
miRNA:   3'- uUUGCGC-----------UGGac-CAUGCGCUGGCgCu -5'
21615 3' -57.1 NC_004812.1 + 152758 0.66 0.889499
Target:  5'- -cGCGCGACgcgCUGGUGCucauGCGcCUGCGc -3'
miRNA:   3'- uuUGCGCUG---GACCAUG----CGCuGGCGCu -5'
21615 3' -57.1 NC_004812.1 + 73762 0.66 0.889499
Target:  5'- -cACGCGggggcGCCgGGUGCccGCGGgcuCCGCGAg -3'
miRNA:   3'- uuUGCGC-----UGGaCCAUG--CGCU---GGCGCU- -5'
21615 3' -57.1 NC_004812.1 + 95427 0.66 0.889499
Target:  5'- --cCGCcauGGCCgGGUgGCGCG-CCGCGGg -3'
miRNA:   3'- uuuGCG---CUGGaCCA-UGCGCuGGCGCU- -5'
21615 3' -57.1 NC_004812.1 + 86754 0.66 0.889499
Target:  5'- -cGCGuCGGCCaUGGcgcagcggcgACGCGGgCGCGAg -3'
miRNA:   3'- uuUGC-GCUGG-ACCa---------UGCGCUgGCGCU- -5'
21615 3' -57.1 NC_004812.1 + 114679 0.66 0.889499
Target:  5'- --uCGCGGuCCaGGg--GCGGCCGCGGg -3'
miRNA:   3'- uuuGCGCU-GGaCCaugCGCUGGCGCU- -5'
21615 3' -57.1 NC_004812.1 + 151012 0.66 0.882687
Target:  5'- cGACGCGGCCUcgcaGGaccccgccgACGgGccGCCGCGAa -3'
miRNA:   3'- uUUGCGCUGGA----CCa--------UGCgC--UGGCGCU- -5'
21615 3' -57.1 NC_004812.1 + 25504 0.66 0.882687
Target:  5'- cGACGCGGCCUcgcaGGaccccgccgACGgGccGCCGCGAa -3'
miRNA:   3'- uUUGCGCUGGA----CCa--------UGCgC--UGGCGCU- -5'
21615 3' -57.1 NC_004812.1 + 136984 0.66 0.882687
Target:  5'- aGAGCGCcugGACCgGGaggcgGCGCGagcgauucGCCGCGGc -3'
miRNA:   3'- -UUUGCG---CUGGaCCa----UGCGC--------UGGCGCU- -5'
21615 3' -57.1 NC_004812.1 + 73776 0.66 0.882687
Target:  5'- -cGCGCGcACCcccgGGUACGCugauGACgCGCGu -3'
miRNA:   3'- uuUGCGC-UGGa---CCAUGCG----CUG-GCGCu -5'
21615 3' -57.1 NC_004812.1 + 94292 0.66 0.882687
Target:  5'- cGGGCGUGcGCCUgGGUGCGCuuggucgccGGCUGCGc -3'
miRNA:   3'- -UUUGCGC-UGGA-CCAUGCG---------CUGGCGCu -5'
21615 3' -57.1 NC_004812.1 + 120147 0.66 0.882687
Target:  5'- gGGGCGCGGggcccccccgcuCCUcGacaACGCGGCCGCGGu -3'
miRNA:   3'- -UUUGCGCU------------GGAcCa--UGCGCUGGCGCU- -5'
21615 3' -57.1 NC_004812.1 + 134849 0.66 0.882687
Target:  5'- gGGugGCGACCgacgGCGCGuCgGCGGc -3'
miRNA:   3'- -UUugCGCUGGaccaUGCGCuGgCGCU- -5'
21615 3' -57.1 NC_004812.1 + 105139 0.66 0.882687
Target:  5'- -cGCGCGGuauCCUGGUAgugGUGGCCGUa- -3'
miRNA:   3'- uuUGCGCU---GGACCAUg--CGCUGGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.