miRNA display CGI


Results 21 - 40 of 385 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21615 3' -57.1 NC_004812.1 + 94292 0.66 0.882687
Target:  5'- cGGGCGUGcGCCUgGGUGCGCuuggucgccGGCUGCGc -3'
miRNA:   3'- -UUUGCGC-UGGA-CCAUGCG---------CUGGCGCu -5'
21615 3' -57.1 NC_004812.1 + 136984 0.66 0.882687
Target:  5'- aGAGCGCcugGACCgGGaggcgGCGCGagcgauucGCCGCGGc -3'
miRNA:   3'- -UUUGCG---CUGGaCCa----UGCGC--------UGGCGCU- -5'
21615 3' -57.1 NC_004812.1 + 151012 0.66 0.882687
Target:  5'- cGACGCGGCCUcgcaGGaccccgccgACGgGccGCCGCGAa -3'
miRNA:   3'- uUUGCGCUGGA----CCa--------UGCgC--UGGCGCU- -5'
21615 3' -57.1 NC_004812.1 + 71190 0.66 0.8806
Target:  5'- aGAGCGCGACaccgcgGGccgcGCcaggcggcgagcggGCGGCCGCGAg -3'
miRNA:   3'- -UUUGCGCUGga----CCa---UG--------------CGCUGGCGCU- -5'
21615 3' -57.1 NC_004812.1 + 121638 0.66 0.875656
Target:  5'- cGGCGCGGCCggcGGaggaggaGCGGCCuGCGGc -3'
miRNA:   3'- uUUGCGCUGGa--CCaug----CGCUGG-CGCU- -5'
21615 3' -57.1 NC_004812.1 + 145937 0.66 0.875656
Target:  5'- ---gGUGACgUGGUugGCG-CUGCGc -3'
miRNA:   3'- uuugCGCUGgACCAugCGCuGGCGCu -5'
21615 3' -57.1 NC_004812.1 + 75089 0.66 0.875656
Target:  5'- cGAGCGCG-CCUGcuccaGCGUcuuGGCCGCGGc -3'
miRNA:   3'- -UUUGCGCuGGACca---UGCG---CUGGCGCU- -5'
21615 3' -57.1 NC_004812.1 + 26322 0.66 0.875656
Target:  5'- --cCGCGACg-GGUACGCcaGCgGCGAg -3'
miRNA:   3'- uuuGCGCUGgaCCAUGCGc-UGgCGCU- -5'
21615 3' -57.1 NC_004812.1 + 61720 0.66 0.875656
Target:  5'- gGGACGCcGCC-GGUcACGUGACCcCGAu -3'
miRNA:   3'- -UUUGCGcUGGaCCA-UGCGCUGGcGCU- -5'
21615 3' -57.1 NC_004812.1 + 137789 0.66 0.875656
Target:  5'- uGGCGgGAUCUGGcGgGCGgcgagggcGCCGCGGa -3'
miRNA:   3'- uUUGCgCUGGACCaUgCGC--------UGGCGCU- -5'
21615 3' -57.1 NC_004812.1 + 85411 0.66 0.875656
Target:  5'- --uCGCcGCCUGG--CGCGGcCCGCGGu -3'
miRNA:   3'- uuuGCGcUGGACCauGCGCU-GGCGCU- -5'
21615 3' -57.1 NC_004812.1 + 141837 0.66 0.875656
Target:  5'- --cCGCGGCCcGGUcuucgagcaggGCGUGACgGUGGa -3'
miRNA:   3'- uuuGCGCUGGaCCA-----------UGCGCUGgCGCU- -5'
21615 3' -57.1 NC_004812.1 + 138068 0.66 0.875656
Target:  5'- -cGCGCcGCgCUGGc-CGCGAgCGCGAg -3'
miRNA:   3'- uuUGCGcUG-GACCauGCGCUgGCGCU- -5'
21615 3' -57.1 NC_004812.1 + 94878 0.66 0.875656
Target:  5'- -cACGUGAUCaucggGGUcACGUGACCgGCGGc -3'
miRNA:   3'- uuUGCGCUGGa----CCA-UGCGCUGG-CGCU- -5'
21615 3' -57.1 NC_004812.1 + 132739 0.66 0.875656
Target:  5'- -cACGUGAUCauaggGGUcACGUGACCgGCGGc -3'
miRNA:   3'- uuUGCGCUGGa----CCA-UGCGCUGG-CGCU- -5'
21615 3' -57.1 NC_004812.1 + 137597 0.66 0.875656
Target:  5'- -cGCGCugcGCC-GGccCGCGGCCGCGGg -3'
miRNA:   3'- uuUGCGc--UGGaCCauGCGCUGGCGCU- -5'
21615 3' -57.1 NC_004812.1 + 2710 0.66 0.875656
Target:  5'- aAGACGCGGCCggaGGccagcacgGCGCGGCgcaggucgcgCGCGGc -3'
miRNA:   3'- -UUUGCGCUGGa--CCa-------UGCGCUG----------GCGCU- -5'
21615 3' -57.1 NC_004812.1 + 71945 0.66 0.875656
Target:  5'- cGGCGCGGggcggcCCUGccgcgACGCGcGCCGCGGg -3'
miRNA:   3'- uUUGCGCU------GGACca---UGCGC-UGGCGCU- -5'
21615 3' -57.1 NC_004812.1 + 39243 0.66 0.875656
Target:  5'- -cGCGCuGCC-GG-GCGCGGCCGCc- -3'
miRNA:   3'- uuUGCGcUGGaCCaUGCGCUGGCGcu -5'
21615 3' -57.1 NC_004812.1 + 152539 0.66 0.875656
Target:  5'- cGGCGCGGCCggcGGaggaggaGCGGCCuGCGGc -3'
miRNA:   3'- uUUGCGCUGGa--CCaug----CGCUGG-CGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.