miRNA display CGI


Results 1 - 20 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21615 3' -57.1 NC_004812.1 + 447 0.7 0.638983
Target:  5'- -cGCGCGGCCccGGUcccGCGCGucCCGCGc -3'
miRNA:   3'- uuUGCGCUGGa-CCA---UGCGCu-GGCGCu -5'
21615 3' -57.1 NC_004812.1 + 569 0.69 0.748242
Target:  5'- -cGCGCGGCCgcgUGGagcCGCGGgCGCGGc -3'
miRNA:   3'- uuUGCGCUGG---ACCau-GCGCUgGCGCU- -5'
21615 3' -57.1 NC_004812.1 + 854 0.67 0.845455
Target:  5'- -cGCGCGugUccc--CGCGGCCGCGAg -3'
miRNA:   3'- uuUGCGCugGaccauGCGCUGGCGCU- -5'
21615 3' -57.1 NC_004812.1 + 1257 0.71 0.618726
Target:  5'- --cCGCGGCCgcccguUGGUcCGcCGGCCGCGGg -3'
miRNA:   3'- uuuGCGCUGG------ACCAuGC-GCUGGCGCU- -5'
21615 3' -57.1 NC_004812.1 + 1406 0.71 0.608608
Target:  5'- --uCGCGGCCcGGccccgACgGCGGCCGCGGg -3'
miRNA:   3'- uuuGCGCUGGaCCa----UG-CGCUGGCGCU- -5'
21615 3' -57.1 NC_004812.1 + 2489 0.67 0.838227
Target:  5'- cGGCgGCGGCCUcgcGGgcgggcgagucggcgGCGCGGCCGuCGAg -3'
miRNA:   3'- uUUG-CGCUGGA---CCa--------------UGCGCUGGC-GCU- -5'
21615 3' -57.1 NC_004812.1 + 2629 0.67 0.829191
Target:  5'- --cCGCGGCCcag-GCGCGGCgGCGGc -3'
miRNA:   3'- uuuGCGCUGGaccaUGCGCUGgCGCU- -5'
21615 3' -57.1 NC_004812.1 + 2710 0.66 0.875656
Target:  5'- aAGACGCGGCCggaGGccagcacgGCGCGGCgcaggucgcgCGCGGc -3'
miRNA:   3'- -UUUGCGCUGGa--CCa-------UGCGCUG----------GCGCU- -5'
21615 3' -57.1 NC_004812.1 + 2806 0.68 0.776439
Target:  5'- uAGACGUGGC--GGcGCGCGACgGCGGg -3'
miRNA:   3'- -UUUGCGCUGgaCCaUGCGCUGgCGCU- -5'
21615 3' -57.1 NC_004812.1 + 3179 0.68 0.795514
Target:  5'- ---gGCGACCUGGcgcauccaggcggcgGCGCGGCgcaGCGGg -3'
miRNA:   3'- uuugCGCUGGACCa--------------UGCGCUGg--CGCU- -5'
21615 3' -57.1 NC_004812.1 + 3488 0.66 0.868412
Target:  5'- cAGCGCGGC--GGgcCGCGGgCGCGGg -3'
miRNA:   3'- uUUGCGCUGgaCCauGCGCUgGCGCU- -5'
21615 3' -57.1 NC_004812.1 + 3522 0.7 0.659219
Target:  5'- ---gGCGGCCccgGGgGCGgGGCCGCGGc -3'
miRNA:   3'- uuugCGCUGGa--CCaUGCgCUGGCGCU- -5'
21615 3' -57.1 NC_004812.1 + 3728 0.72 0.568379
Target:  5'- gGAGCGC-ACCUGGcGCG-GGCCGCGc -3'
miRNA:   3'- -UUUGCGcUGGACCaUGCgCUGGCGCu -5'
21615 3' -57.1 NC_004812.1 + 3914 0.69 0.719146
Target:  5'- cGGCGCGGCggcgGGgccGCGCGGCgGCGGc -3'
miRNA:   3'- uUUGCGCUGga--CCa--UGCGCUGgCGCU- -5'
21615 3' -57.1 NC_004812.1 + 4845 0.7 0.659219
Target:  5'- gGGGCaCGGCCcgcGGcgGCGCGGCCGUGAa -3'
miRNA:   3'- -UUUGcGCUGGa--CCa-UGCGCUGGCGCU- -5'
21615 3' -57.1 NC_004812.1 + 4850 0.67 0.845455
Target:  5'- -uGCGgGGCCggggagGGgcCGCGGCCcgcGCGAg -3'
miRNA:   3'- uuUGCgCUGGa-----CCauGCGCUGG---CGCU- -5'
21615 3' -57.1 NC_004812.1 + 4938 0.69 0.728929
Target:  5'- cGGAgGCGGCgCUGGaGgGCGGCCgGCGGg -3'
miRNA:   3'- -UUUgCGCUG-GACCaUgCGCUGG-CGCU- -5'
21615 3' -57.1 NC_004812.1 + 5242 0.68 0.794619
Target:  5'- --uCGCGGCCgucGGgGCGCGccgagucggccGCCGCGGc -3'
miRNA:   3'- uuuGCGCUGGa--CCaUGCGC-----------UGGCGCU- -5'
21615 3' -57.1 NC_004812.1 + 5872 0.72 0.558416
Target:  5'- uGGGCGCgGGCCgGGggGCGCGGgCGCGGg -3'
miRNA:   3'- -UUUGCG-CUGGaCCa-UGCGCUgGCGCU- -5'
21615 3' -57.1 NC_004812.1 + 7231 0.66 0.875656
Target:  5'- -cACGUGAUCauaggGGUcACGUGACCgGCGGc -3'
miRNA:   3'- uuUGCGCUGGa----CCA-UGCGCUGG-CGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.