miRNA display CGI


Results 1 - 20 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21615 5' -64.1 NC_004812.1 + 56024 0.65 0.574666
Target:  5'- cGCaCGCUGGgguUCGCcgacgcgGUGCuGGCCuGCCUCu -3'
miRNA:   3'- uCG-GCGACC---AGCG-------CGCG-CUGG-CGGAG- -5'
21615 5' -64.1 NC_004812.1 + 84694 0.65 0.574666
Target:  5'- cGCCGCUGcagCGCcCGCGgcgccgcGCCGCC-Cg -3'
miRNA:   3'- uCGGCGACca-GCGcGCGC-------UGGCGGaG- -5'
21615 5' -64.1 NC_004812.1 + 147497 0.65 0.573706
Target:  5'- cGCCGCgggGGUCcgguggccccgagGCGCcgucuucGCGccGCCGCCUg -3'
miRNA:   3'- uCGGCGa--CCAG-------------CGCG-------CGC--UGGCGGAg -5'
21615 5' -64.1 NC_004812.1 + 53084 0.66 0.56987
Target:  5'- gGGCCGCcccagGGaccugcaggagaugcUC-CGCGCGGCCGUCg- -3'
miRNA:   3'- -UCGGCGa----CC---------------AGcGCGCGCUGGCGGag -5'
21615 5' -64.1 NC_004812.1 + 56676 0.66 0.56604
Target:  5'- cGGgCGCgGcGUCGaCGCgcaucuucgGCGGCUGCCUCc -3'
miRNA:   3'- -UCgGCGaC-CAGC-GCG---------CGCUGGCGGAG- -5'
21615 5' -64.1 NC_004812.1 + 83066 0.66 0.56604
Target:  5'- uGCUGCccgcGGUCGCuGCGgGcCCGCCc- -3'
miRNA:   3'- uCGGCGa---CCAGCG-CGCgCuGGCGGag -5'
21615 5' -64.1 NC_004812.1 + 20412 0.66 0.56604
Target:  5'- cGCUGCUGGaUCGaCaCGCGGCCcuGCCcCg -3'
miRNA:   3'- uCGGCGACC-AGC-GcGCGCUGG--CGGaG- -5'
21615 5' -64.1 NC_004812.1 + 128959 0.66 0.56604
Target:  5'- cGCCGCgggGGUCGgGCcCGGCgggcggucgCGCCgUCa -3'
miRNA:   3'- uCGGCGa--CCAGCgCGcGCUG---------GCGG-AG- -5'
21615 5' -64.1 NC_004812.1 + 3451 0.66 0.56604
Target:  5'- cGCCGCgggGGUCGgGCcCGGCgggcggucgCGCCgUCa -3'
miRNA:   3'- uCGGCGa--CCAGCgCGcGCUG---------GCGG-AG- -5'
21615 5' -64.1 NC_004812.1 + 58210 0.66 0.56604
Target:  5'- cGCUGC-GG-CGCcgcccCGCGGCCGCCg- -3'
miRNA:   3'- uCGGCGaCCaGCGc----GCGCUGGCGGag -5'
21615 5' -64.1 NC_004812.1 + 46897 0.66 0.56604
Target:  5'- cGCCccgggGCgGG-CGCG-GCGGCCGCCg- -3'
miRNA:   3'- uCGG-----CGaCCaGCGCgCGCUGGCGGag -5'
21615 5' -64.1 NC_004812.1 + 99022 0.66 0.56604
Target:  5'- uAGUCgGCgGGccUCGCGCGCc-CCGUCUCg -3'
miRNA:   3'- -UCGG-CGaCC--AGCGCGCGcuGGCGGAG- -5'
21615 5' -64.1 NC_004812.1 + 30647 0.66 0.56604
Target:  5'- gGGgCGCgGGaCGCGCGgGACCgggGCCg- -3'
miRNA:   3'- -UCgGCGaCCaGCGCGCgCUGG---CGGag -5'
21615 5' -64.1 NC_004812.1 + 156155 0.66 0.56604
Target:  5'- gGGgCGCgGGaCGCGCGgGACCgggGCCg- -3'
miRNA:   3'- -UCgGCGaCCaGCGCGCgCUGG---CGGag -5'
21615 5' -64.1 NC_004812.1 + 135127 0.66 0.56604
Target:  5'- cGUCGUgGG-CGCGCGCGGucgguggcCCGCC-Ca -3'
miRNA:   3'- uCGGCGaCCaGCGCGCGCU--------GGCGGaG- -5'
21615 5' -64.1 NC_004812.1 + 26561 0.66 0.56604
Target:  5'- aGGCCauggGCUGGcugcagaaccCGCGCGUcACCGCCg- -3'
miRNA:   3'- -UCGG----CGACCa---------GCGCGCGcUGGCGGag -5'
21615 5' -64.1 NC_004812.1 + 104870 0.66 0.56604
Target:  5'- cGGCCGCggcGGUCGuCGuCGCcgUCGCCgUCg -3'
miRNA:   3'- -UCGGCGa--CCAGC-GC-GCGcuGGCGG-AG- -5'
21615 5' -64.1 NC_004812.1 + 129140 0.66 0.56604
Target:  5'- cGCCgGCgGG-CGCGCgGCG-CCGCC-Cg -3'
miRNA:   3'- uCGG-CGaCCaGCGCG-CGCuGGCGGaG- -5'
21615 5' -64.1 NC_004812.1 + 3632 0.66 0.56604
Target:  5'- cGCCgGCgGG-CGCGCgGCG-CCGCC-Cg -3'
miRNA:   3'- uCGG-CGaCCaGCGCG-CGCuGGCGGaG- -5'
21615 5' -64.1 NC_004812.1 + 152663 0.66 0.56604
Target:  5'- uGCCcggGCUGGcggcCGCGCGCGccguGCCGCg-- -3'
miRNA:   3'- uCGG---CGACCa---GCGCGCGC----UGGCGgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.