miRNA display CGI


Results 1 - 20 of 758 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21623 3' -59.3 NC_004812.1 + 60084 0.65 0.817943
Target:  5'- gGCCGGCGgcCCGCGccagguaGGCGCCg -3'
miRNA:   3'- gCGGUCGC--GGCGCuagaagcUCGCGG- -5'
21623 3' -59.3 NC_004812.1 + 36412 0.66 0.813739
Target:  5'- aCGCCgGGCGCCGCGcagcagggacacggCgggcCGGGgGCCc -3'
miRNA:   3'- -GCGG-UCGCGGCGCua------------Gaa--GCUCgCGG- -5'
21623 3' -59.3 NC_004812.1 + 5511 0.66 0.813739
Target:  5'- aCGCCgGGCGCCGCGcagcagggacacggCgggcCGGGgGCCc -3'
miRNA:   3'- -GCGG-UCGCGGCGCua------------Gaa--GCUCgCGG- -5'
21623 3' -59.3 NC_004812.1 + 22516 0.66 0.812894
Target:  5'- cCGUCAcGCaCCGCGAcg-UCG-GCGCCc -3'
miRNA:   3'- -GCGGU-CGcGGCGCUagaAGCuCGCGG- -5'
21623 3' -59.3 NC_004812.1 + 127741 0.66 0.812894
Target:  5'- gGCCAGCGCaCGCGcggcgCG-GCGgCg -3'
miRNA:   3'- gCGGUCGCG-GCGCuagaaGCuCGCgG- -5'
21623 3' -59.3 NC_004812.1 + 129978 0.66 0.812894
Target:  5'- uGCUguuGCGCCGCGcgCc-CGAG-GCCu -3'
miRNA:   3'- gCGGu--CGCGGCGCuaGaaGCUCgCGG- -5'
21623 3' -59.3 NC_004812.1 + 4470 0.66 0.812894
Target:  5'- uGCUguuGCGCCGCGcgCc-CGAG-GCCu -3'
miRNA:   3'- gCGGu--CGCGGCGCuaGaaGCUCgCGG- -5'
21623 3' -59.3 NC_004812.1 + 125210 0.66 0.812894
Target:  5'- gGCCgcGGCgGCCGUGAg-UUCGGGCaGCa -3'
miRNA:   3'- gCGG--UCG-CGGCGCUagAAGCUCG-CGg -5'
21623 3' -59.3 NC_004812.1 + 36618 0.66 0.812894
Target:  5'- gGCgGGggucUGCCGCGGgaggaGGGCGCCg -3'
miRNA:   3'- gCGgUC----GCGGCGCUagaagCUCGCGG- -5'
21623 3' -59.3 NC_004812.1 + 5717 0.66 0.812894
Target:  5'- gGCgGGggucUGCCGCGGgaggaGGGCGCCg -3'
miRNA:   3'- gCGgUC----GCGGCGCUagaagCUCGCGG- -5'
21623 3' -59.3 NC_004812.1 + 156111 0.66 0.812894
Target:  5'- gGCCgcGGCgGCCGUGAg-UUCGGGCaGCa -3'
miRNA:   3'- gCGG--UCG-CGGCGCUagAAGCUCG-CGg -5'
21623 3' -59.3 NC_004812.1 + 30835 0.66 0.812894
Target:  5'- gCGCCAgGCGCCGCc--Cgg-GGGCGCg -3'
miRNA:   3'- -GCGGU-CGCGGCGcuaGaagCUCGCGg -5'
21623 3' -59.3 NC_004812.1 + 43568 0.66 0.812894
Target:  5'- aCGCCGGcCGCgGCcGUCcgucCGGcGCGCCc -3'
miRNA:   3'- -GCGGUC-GCGgCGcUAGaa--GCU-CGCGG- -5'
21623 3' -59.3 NC_004812.1 + 40459 0.66 0.812894
Target:  5'- uGCC-GCGCCGCGGccCUguggcccgcccUCGGG-GCCc -3'
miRNA:   3'- gCGGuCGCGGCGCUa-GA-----------AGCUCgCGG- -5'
21623 3' -59.3 NC_004812.1 + 23847 0.66 0.812894
Target:  5'- gGcCCGGCGCCGCccucgagccGAUCUacucCGAGgucaaguaCGCCg -3'
miRNA:   3'- gC-GGUCGCGGCG---------CUAGAa---GCUC--------GCGG- -5'
21623 3' -59.3 NC_004812.1 + 28198 0.66 0.812894
Target:  5'- cCGCCGGUG-CGCGAUCa--GAaagucGCGUCg -3'
miRNA:   3'- -GCGGUCGCgGCGCUAGaagCU-----CGCGG- -5'
21623 3' -59.3 NC_004812.1 + 16710 0.66 0.812894
Target:  5'- gCGCgAGCGaCCGCGGggccggucccgcUCgcccgUCGAcgcaggGCGCCc -3'
miRNA:   3'- -GCGgUCGC-GGCGCU------------AGa----AGCU------CGCGG- -5'
21623 3' -59.3 NC_004812.1 + 135129 0.66 0.812894
Target:  5'- uCGUgGGCGCgCGCGGUCggUGGccCGCCc -3'
miRNA:   3'- -GCGgUCGCG-GCGCUAGaaGCUc-GCGG- -5'
21623 3' -59.3 NC_004812.1 + 68888 0.66 0.812894
Target:  5'- gCGCCcGCGCCGCcucccgCUcgCGGuCGCCa -3'
miRNA:   3'- -GCGGuCGCGGCGcua---GAa-GCUcGCGG- -5'
21623 3' -59.3 NC_004812.1 + 70399 0.66 0.812894
Target:  5'- ---gGGUGCCGCGAUC--CGAuGCGUCu -3'
miRNA:   3'- gcggUCGCGGCGCUAGaaGCU-CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.