miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21623 5' -57.7 NC_004812.1 + 141463 0.66 0.849027
Target:  5'- -gGUCGUGCGGGGAgcccccgagGCGACgcgGCcGg- -3'
miRNA:   3'- gaCAGCGCGCUCCU---------CGCUGa--CGaCau -5'
21623 5' -57.7 NC_004812.1 + 4652 0.66 0.84102
Target:  5'- ---cCGCGCGGGGAGgGGCUcGCcGg- -3'
miRNA:   3'- gacaGCGCGCUCCUCgCUGA-CGaCau -5'
21623 5' -57.7 NC_004812.1 + 87905 0.66 0.84102
Target:  5'- gCUGgCGgGCGAGGAgucGCGGC-GCUGc- -3'
miRNA:   3'- -GACaGCgCGCUCCU---CGCUGaCGACau -5'
21623 5' -57.7 NC_004812.1 + 35553 0.66 0.84102
Target:  5'- ---cCGCGCGGGGAGgGGCUcGCcGg- -3'
miRNA:   3'- gacaGCGCGCUCCUCgCUGA-CGaCau -5'
21623 5' -57.7 NC_004812.1 + 64294 0.66 0.84102
Target:  5'- ---aCGCGCGAGcGGGCGGCgggGCg--- -3'
miRNA:   3'- gacaGCGCGCUC-CUCGCUGa--CGacau -5'
21623 5' -57.7 NC_004812.1 + 18512 0.66 0.832825
Target:  5'- ---cCGcCGCGAGGAGCGACaGCc--- -3'
miRNA:   3'- gacaGC-GCGCUCCUCGCUGaCGacau -5'
21623 5' -57.7 NC_004812.1 + 34438 0.66 0.824449
Target:  5'- -cGUCGCGCGGGGuGgGAUgGUcGUGg -3'
miRNA:   3'- gaCAGCGCGCUCCuCgCUGaCGaCAU- -5'
21623 5' -57.7 NC_004812.1 + 111033 0.66 0.807184
Target:  5'- gUGg-GCGCGAGGAacggccuguGCGugUcGCUGUGc -3'
miRNA:   3'- gACagCGCGCUCCU---------CGCugA-CGACAU- -5'
21623 5' -57.7 NC_004812.1 + 42248 0.66 0.807184
Target:  5'- -cGUCGCGUguucGGGGAGCaGGCcuggagGCUGUu -3'
miRNA:   3'- gaCAGCGCG----CUCCUCG-CUGa-----CGACAu -5'
21623 5' -57.7 NC_004812.1 + 103041 0.67 0.798311
Target:  5'- cCUGUCGCGCGucGAccucgGgGACUGCg--- -3'
miRNA:   3'- -GACAGCGCGCucCU-----CgCUGACGacau -5'
21623 5' -57.7 NC_004812.1 + 9994 0.67 0.798311
Target:  5'- gCUGUCGCGUgGAGGAGguGCUGCc--- -3'
miRNA:   3'- -GACAGCGCG-CUCCUCgcUGACGacau -5'
21623 5' -57.7 NC_004812.1 + 39558 0.67 0.751886
Target:  5'- -cGUCGCggGCGAuGAGCGGCUGgUGc- -3'
miRNA:   3'- gaCAGCG--CGCUcCUCGCUGACgACau -5'
21623 5' -57.7 NC_004812.1 + 76159 0.67 0.751886
Target:  5'- -cGUCGCGCGcccucuuGcGGGCGGCUGggGUGg -3'
miRNA:   3'- gaCAGCGCGCu------C-CUCGCUGACgaCAU- -5'
21623 5' -57.7 NC_004812.1 + 35613 0.67 0.751886
Target:  5'- -cGcCGCGCGAGGAcgggGCGugUGCc--- -3'
miRNA:   3'- gaCaGCGCGCUCCU----CGCugACGacau -5'
21623 5' -57.7 NC_004812.1 + 4712 0.67 0.751886
Target:  5'- -cGcCGCGCGAGGAcgggGCGugUGCc--- -3'
miRNA:   3'- gaCaGCGCGCUCCU----CGCugACGacau -5'
21623 5' -57.7 NC_004812.1 + 123602 0.68 0.732521
Target:  5'- -cGUCGgGCGGGcGGGCGGCggagguccGCUGg- -3'
miRNA:   3'- gaCAGCgCGCUC-CUCGCUGa-------CGACau -5'
21623 5' -57.7 NC_004812.1 + 154503 0.68 0.732521
Target:  5'- -cGUCGgGCGGGcGGGCGGCggagguccGCUGg- -3'
miRNA:   3'- gaCAGCgCGCUC-CUCGCUGa-------CGACau -5'
21623 5' -57.7 NC_004812.1 + 154748 0.68 0.721718
Target:  5'- -gGUCGCG-GAGGAGCGggccgggGCUGCg--- -3'
miRNA:   3'- gaCAGCGCgCUCCUCGC-------UGACGacau -5'
21623 5' -57.7 NC_004812.1 + 29240 0.68 0.721718
Target:  5'- -gGUCGCG-GAGGAGCGggccgggGCUGCg--- -3'
miRNA:   3'- gaCAGCGCgCUCCUCGC-------UGACGacau -5'
21623 5' -57.7 NC_004812.1 + 96561 0.68 0.702848
Target:  5'- gCUGUCGCGCGAGcacAGCGAgUacaccugccgGCUGg- -3'
miRNA:   3'- -GACAGCGCGCUCc--UCGCUgA----------CGACau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.