miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21626 3' -57.4 NC_004812.1 + 123560 0.66 0.857947
Target:  5'- gGCGGGGCCgUCAaaaGGGGccgccggGgGCgGCg -3'
miRNA:   3'- -UGUCCCGGaAGUa--CCCCaa-----CgCGaCG- -5'
21626 3' -57.4 NC_004812.1 + 113147 0.66 0.857947
Target:  5'- -uGGGGC--UCGUGGGGgcgGUGUuuaUGCg -3'
miRNA:   3'- ugUCCCGgaAGUACCCCaa-CGCG---ACG- -5'
21626 3' -57.4 NC_004812.1 + 155590 0.66 0.857947
Target:  5'- gGCcGGGCCcUCGcGGGG--GCGCgGCc -3'
miRNA:   3'- -UGuCCCGGaAGUaCCCCaaCGCGaCG- -5'
21626 3' -57.4 NC_004812.1 + 125548 0.66 0.857947
Target:  5'- gGCGGGGg-UUCGUucGGGGggGCGCguuuggGCg -3'
miRNA:   3'- -UGUCCCggAAGUA--CCCCaaCGCGa-----CG- -5'
21626 3' -57.4 NC_004812.1 + 129022 0.66 0.857947
Target:  5'- cCGGGGCCggCGgccccgGGGGcgGgGCcGCg -3'
miRNA:   3'- uGUCCCGGaaGUa-----CCCCaaCgCGaCG- -5'
21626 3' -57.4 NC_004812.1 + 104696 0.66 0.857947
Target:  5'- aGCuGGGCCgccgcCAUGcGGGcgUGCGUgGCc -3'
miRNA:   3'- -UGuCCCGGaa---GUAC-CCCa-ACGCGaCG- -5'
21626 3' -57.4 NC_004812.1 + 3514 0.66 0.857947
Target:  5'- cCGGGGCCggCGgccccgGGGGcgGgGCcGCg -3'
miRNA:   3'- uGUCCCGGaaGUa-----CCCCaaCgCGaCG- -5'
21626 3' -57.4 NC_004812.1 + 30081 0.66 0.857947
Target:  5'- gGCcGGGCCcUCGcGGGG--GCGCgGCc -3'
miRNA:   3'- -UGuCCCGGaAGUaCCCCaaCGCGaCG- -5'
21626 3' -57.4 NC_004812.1 + 39 0.66 0.857947
Target:  5'- gGCGGGGg-UUCGUucGGGGggGCGCguuuggGCg -3'
miRNA:   3'- -UGUCCCggAAGUA--CCCCaaCGCGa-----CG- -5'
21626 3' -57.4 NC_004812.1 + 156449 0.66 0.857947
Target:  5'- gGCGGGGg-UUCGUucGGGGggGCGCguuuggGCg -3'
miRNA:   3'- -UGUCCCggAAGUA--CCCCaaCGCGa-----CG- -5'
21626 3' -57.4 NC_004812.1 + 100357 0.66 0.850136
Target:  5'- cGCGGGGCCacggUUCcgGcgcccgccgccGGGggGCGCgagGCc -3'
miRNA:   3'- -UGUCCCGG----AAGuaC-----------CCCaaCGCGa--CG- -5'
21626 3' -57.4 NC_004812.1 + 43043 0.66 0.850136
Target:  5'- -uGGGGCCgcaggGGcaGGUUGUGCUGg -3'
miRNA:   3'- ugUCCCGGaaguaCC--CCAACGCGACg -5'
21626 3' -57.4 NC_004812.1 + 90672 0.66 0.850136
Target:  5'- cGCGGGcGUCUUgGuagaUGGGGagGCGCUugaGCa -3'
miRNA:   3'- -UGUCC-CGGAAgU----ACCCCaaCGCGA---CG- -5'
21626 3' -57.4 NC_004812.1 + 25864 0.66 0.842128
Target:  5'- -aGGGGCC----UGGGGUUG-GCgGCg -3'
miRNA:   3'- ugUCCCGGaaguACCCCAACgCGaCG- -5'
21626 3' -57.4 NC_004812.1 + 71127 0.66 0.842128
Target:  5'- cGCGGGcGCC-UCG-GGGGUUcggggGCGC-GCg -3'
miRNA:   3'- -UGUCC-CGGaAGUaCCCCAA-----CGCGaCG- -5'
21626 3' -57.4 NC_004812.1 + 75453 0.66 0.842128
Target:  5'- cCGGGGUucugCUUCAUGGGccacuuucuGgcGCGCUGg -3'
miRNA:   3'- uGUCCCG----GAAGUACCC---------CaaCGCGACg -5'
21626 3' -57.4 NC_004812.1 + 59778 0.66 0.842128
Target:  5'- -uGGGGCCg--GUGGGGgcgGCGCc-- -3'
miRNA:   3'- ugUCCCGGaagUACCCCaa-CGCGacg -5'
21626 3' -57.4 NC_004812.1 + 91801 0.66 0.842128
Target:  5'- cGCAGcgucauGGCCUccggUCguagGUGGGGUagcgGCGCUGg -3'
miRNA:   3'- -UGUC------CCGGA----AG----UACCCCAa---CGCGACg -5'
21626 3' -57.4 NC_004812.1 + 71022 0.66 0.833099
Target:  5'- cGCGGGGCCggCGucuggagccgcUGGGGaggGCGgccgcccCUGCg -3'
miRNA:   3'- -UGUCCCGGaaGU-----------ACCCCaa-CGC-------GACG- -5'
21626 3' -57.4 NC_004812.1 + 61518 0.66 0.825546
Target:  5'- gGCGGaccGCCcUCG-GGGGUUGuCGUUGCc -3'
miRNA:   3'- -UGUCc--CGGaAGUaCCCCAAC-GCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.