miRNA display CGI


Results 1 - 20 of 763 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21626 5' -55.5 NC_004812.1 + 154121 0.66 0.933623
Target:  5'- -aGUAGCGGGAGaGCagcacGAGGUCGUc -3'
miRNA:   3'- ugCAUCGCCUUC-CGcuuc-UUCCGGCG- -5'
21626 5' -55.5 NC_004812.1 + 14817 0.66 0.933623
Target:  5'- uGCGcAGCGGAAGcGUGuaccgacAGggGcccuuGCCGCg -3'
miRNA:   3'- -UGCaUCGCCUUC-CGCu------UCuuC-----CGGCG- -5'
21626 5' -55.5 NC_004812.1 + 68218 0.66 0.933623
Target:  5'- cGCGgccGGcCGGggGuGCGc-GggGGCCGg -3'
miRNA:   3'- -UGCa--UC-GCCuuC-CGCuuCuuCCGGCg -5'
21626 5' -55.5 NC_004812.1 + 17773 0.66 0.933623
Target:  5'- gGCG-GGCGuGggGGCGAgaacGGGguGGGUgCGCg -3'
miRNA:   3'- -UGCaUCGC-CuuCCGCU----UCU--UCCG-GCG- -5'
21626 5' -55.5 NC_004812.1 + 153919 0.66 0.933623
Target:  5'- ---aAGCGGugcAGGCaGggGAAGGUguUGCa -3'
miRNA:   3'- ugcaUCGCCu--UCCG-CuuCUUCCG--GCG- -5'
21626 5' -55.5 NC_004812.1 + 116134 0.66 0.933623
Target:  5'- gGCccgGGCcccGAGGGCGGGccacAGGGCCGCg -3'
miRNA:   3'- -UGca-UCGc--CUUCCGCUUc---UUCCGGCG- -5'
21626 5' -55.5 NC_004812.1 + 146249 0.66 0.933623
Target:  5'- gGCGUAcuacaCGGAGaGCGAcgacgAGAcGGCCGCc -3'
miRNA:   3'- -UGCAUc----GCCUUcCGCU-----UCUuCCGGCG- -5'
21626 5' -55.5 NC_004812.1 + 26725 0.66 0.933623
Target:  5'- cGCGUcgcacGGCGGGccguGGGCGuuGGucucGGCCGa -3'
miRNA:   3'- -UGCA-----UCGCCU----UCCGCuuCUu---CCGGCg -5'
21626 5' -55.5 NC_004812.1 + 2379 0.66 0.933623
Target:  5'- gGCGUcGCGGuccaGCGccagguAGAcGGGCCGCa -3'
miRNA:   3'- -UGCAuCGCCuuc-CGCu-----UCU-UCCGGCG- -5'
21626 5' -55.5 NC_004812.1 + 9362 0.66 0.933623
Target:  5'- cCGUGGCGcacGGCGGccauGAAcuucguGGCCGCg -3'
miRNA:   3'- uGCAUCGCcuuCCGCUu---CUU------CCGGCG- -5'
21626 5' -55.5 NC_004812.1 + 123018 0.66 0.933623
Target:  5'- ---aAGCGGugcAGGCaGggGAAGGUguUGCa -3'
miRNA:   3'- ugcaUCGCCu--UCCG-CuuCUUCCG--GCG- -5'
21626 5' -55.5 NC_004812.1 + 82135 0.66 0.933623
Target:  5'- -gGUGGCGGGugccacggGGGUGAugucccacucGGucuGGCCGUa -3'
miRNA:   3'- ugCAUCGCCU--------UCCGCU----------UCuu-CCGGCG- -5'
21626 5' -55.5 NC_004812.1 + 53334 0.66 0.933623
Target:  5'- aGCGU-GCGGggGGCGGcc---GUCGCc -3'
miRNA:   3'- -UGCAuCGCCuuCCGCUucuucCGGCG- -5'
21626 5' -55.5 NC_004812.1 + 123220 0.66 0.933623
Target:  5'- -aGUAGCGGGAGaGCagcacGAGGUCGUc -3'
miRNA:   3'- ugCAUCGCCUUC-CGcuuc-UUCCGGCG- -5'
21626 5' -55.5 NC_004812.1 + 108254 0.66 0.933623
Target:  5'- gGCGUccgcGGCGGAGcccucGGCGgcGuccGCCGCc -3'
miRNA:   3'- -UGCA----UCGCCUU-----CCGCuuCuucCGGCG- -5'
21626 5' -55.5 NC_004812.1 + 127887 0.66 0.933623
Target:  5'- gGCGUcGCGGuccaGCGccagguAGAcGGGCCGCa -3'
miRNA:   3'- -UGCAuCGCCuuc-CGCu-----UCU-UCCGGCG- -5'
21626 5' -55.5 NC_004812.1 + 71814 0.66 0.933623
Target:  5'- gGCGUGGgGGuuGGCGGuaGGGGaCGUg -3'
miRNA:   3'- -UGCAUCgCCuuCCGCUucUUCCgGCG- -5'
21626 5' -55.5 NC_004812.1 + 34830 0.66 0.933623
Target:  5'- cACGUAGCcguccuGGGcgcucaGGGCGAAGA--GCCGg -3'
miRNA:   3'- -UGCAUCG------CCU------UCCGCUUCUucCGGCg -5'
21626 5' -55.5 NC_004812.1 + 110173 0.66 0.933623
Target:  5'- ----cGCGGggGuGuCGAcgAGGAGGCgGCg -3'
miRNA:   3'- ugcauCGCCuuC-C-GCU--UCUUCCGgCG- -5'
21626 5' -55.5 NC_004812.1 + 96844 0.66 0.933623
Target:  5'- uCG-AGCGGugcgacGGCGggGugaucgucGGCCGCc -3'
miRNA:   3'- uGCaUCGCCuu----CCGCuuCuu------CCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.