miRNA display CGI


Results 1 - 20 of 763 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21626 5' -55.5 NC_004812.1 + 70872 0.78 0.350102
Target:  5'- gGCGUGGCugcgcggGGggGGCGggGAGGGggcggggaucUCGCg -3'
miRNA:   3'- -UGCAUCG-------CCuuCCGCuuCUUCC----------GGCG- -5'
21626 5' -55.5 NC_004812.1 + 67715 0.79 0.291725
Target:  5'- -gGUGGCGGAcuGGGCGAGGAAGGagaaguuggaguaCUGCa -3'
miRNA:   3'- ugCAUCGCCU--UCCGCUUCUUCC-------------GGCG- -5'
21626 5' -55.5 NC_004812.1 + 77957 0.79 0.292406
Target:  5'- -gGUGGCGG-GGGCGAAGAggguguccGGGCCGg -3'
miRNA:   3'- ugCAUCGCCuUCCGCUUCU--------UCCGGCg -5'
21626 5' -55.5 NC_004812.1 + 101946 0.79 0.299279
Target:  5'- cGCGgcGCGGgcGGCGGGcgucaGGGGCCGCg -3'
miRNA:   3'- -UGCauCGCCuuCCGCUUc----UUCCGGCG- -5'
21626 5' -55.5 NC_004812.1 + 128592 0.78 0.312682
Target:  5'- cGCGUcgguccaGGCGGGcgGGGCGggGGAGgcGCCGCc -3'
miRNA:   3'- -UGCA-------UCGCCU--UCCGCuuCUUC--CGGCG- -5'
21626 5' -55.5 NC_004812.1 + 81100 0.78 0.313399
Target:  5'- cCGUGGCGGugcGGGCGgcGugguGGGCCGUg -3'
miRNA:   3'- uGCAUCGCCu--UCCGCuuCu---UCCGGCG- -5'
21626 5' -55.5 NC_004812.1 + 154944 0.78 0.319917
Target:  5'- gGCGgacGCGGggGGgGggGGaggggggacgggcGGGCCGCg -3'
miRNA:   3'- -UGCau-CGCCuuCCgCuuCU-------------UCCGGCG- -5'
21626 5' -55.5 NC_004812.1 + 155711 0.78 0.328019
Target:  5'- gGCGUGGgGGAGGGgGGugggggguGGggGGCgCGCg -3'
miRNA:   3'- -UGCAUCgCCUUCCgCU--------UCuuCCG-GCG- -5'
21626 5' -55.5 NC_004812.1 + 71380 0.78 0.335516
Target:  5'- gGCGUGG-GGAcGGGCGAGGcgGGGGUCGCa -3'
miRNA:   3'- -UGCAUCgCCU-UCCGCUUC--UUCCGGCG- -5'
21626 5' -55.5 NC_004812.1 + 25019 0.8 0.272527
Target:  5'- -gGUGGCGGGgguuGGCGAAGAuGGGCuCGCg -3'
miRNA:   3'- ugCAUCGCCUu---CCGCUUCU-UCCG-GCG- -5'
21626 5' -55.5 NC_004812.1 + 6536 0.8 0.253748
Target:  5'- ---gGGCGGggGGCcGAGggGGCUGCc -3'
miRNA:   3'- ugcaUCGCCuuCCGcUUCuuCCGGCG- -5'
21626 5' -55.5 NC_004812.1 + 125163 0.8 0.241828
Target:  5'- cGCGccggGGCGGGAGGCG-GGAGGGCCcggGCg -3'
miRNA:   3'- -UGCa---UCGCCUUCCGCuUCUUCCGG---CG- -5'
21626 5' -55.5 NC_004812.1 + 121806 0.86 0.104616
Target:  5'- cGCGUGGCGGGggcggccucggAGGCGGAGGccgggcgcuugcGGGCCGCg -3'
miRNA:   3'- -UGCAUCGCCU-----------UCCGCUUCU------------UCCGGCG- -5'
21626 5' -55.5 NC_004812.1 + 5130 0.84 0.150536
Target:  5'- gGCG-GGCGcGGAGGCG-GGAGGGCCGCg -3'
miRNA:   3'- -UGCaUCGC-CUUCCGCuUCUUCCGGCG- -5'
21626 5' -55.5 NC_004812.1 + 36021 0.83 0.170978
Target:  5'- -gGUGGCGGgcGGCGAuGucGGCCGCg -3'
miRNA:   3'- ugCAUCGCCuuCCGCUuCuuCCGGCG- -5'
21626 5' -55.5 NC_004812.1 + 116913 0.83 0.170978
Target:  5'- aGCccgGGCGGGAGGgGGAGGAGGCCGg -3'
miRNA:   3'- -UGca-UCGCCUUCCgCUUCUUCCGGCg -5'
21626 5' -55.5 NC_004812.1 + 66641 0.82 0.193865
Target:  5'- gGCGaAGCGGGAGGCGcgucGGGAGGCgCGCc -3'
miRNA:   3'- -UGCaUCGCCUUCCGCu---UCUUCCG-GCG- -5'
21626 5' -55.5 NC_004812.1 + 155064 0.81 0.214065
Target:  5'- cGCGUagGGgGGAAGGgGggGggGGCgGCg -3'
miRNA:   3'- -UGCA--UCgCCUUCCgCuuCuuCCGgCG- -5'
21626 5' -55.5 NC_004812.1 + 19778 0.81 0.236045
Target:  5'- gGCGacGCGcGccGGGGCGAAGAGGGCCGCu -3'
miRNA:   3'- -UGCauCGC-C--UUCCGCUUCUUCCGGCG- -5'
21626 5' -55.5 NC_004812.1 + 122556 0.8 0.241828
Target:  5'- gGCGcGGgGGggGGCGGAGGGgagcgcggcGGCCGCg -3'
miRNA:   3'- -UGCaUCgCCuuCCGCUUCUU---------CCGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.