miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21633 3' -55.6 NC_004812.1 + 136037 0.66 0.9303
Target:  5'- gCCGGUCCggucuggggaggUCcAUCaGCGGC-GCGGCc -3'
miRNA:   3'- -GGUCAGG------------AGuUAGaCGUCGaCGCCGc -5'
21633 3' -55.6 NC_004812.1 + 50558 0.66 0.9303
Target:  5'- gCCAGUcucCCUCGGacccCUGCGucGCgccguugGCGGCGa -3'
miRNA:   3'- -GGUCA---GGAGUUa---GACGU--CGa------CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 124445 0.66 0.9303
Target:  5'- cCCGGUCCgcgCGGgg-GCGccccGCcGCGGCGg -3'
miRNA:   3'- -GGUCAGGa--GUUagaCGU----CGaCGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 102904 0.66 0.9303
Target:  5'- cCCAagcgccCCUCGGUCUGCAcGCUgaccaaGUGGCa -3'
miRNA:   3'- -GGUca----GGAGUUAGACGU-CGA------CGCCGc -5'
21633 3' -55.6 NC_004812.1 + 27830 0.66 0.9303
Target:  5'- gCUGG-CCUCGcUCgccGCGcGCUGCGGCc -3'
miRNA:   3'- -GGUCaGGAGUuAGa--CGU-CGACGCCGc -5'
21633 3' -55.6 NC_004812.1 + 153338 0.66 0.9303
Target:  5'- gCUGG-CCUCGcUCgccGCGcGCUGCGGCc -3'
miRNA:   3'- -GGUCaGGAGUuAGa--CGU-CGACGCCGc -5'
21633 3' -55.6 NC_004812.1 + 13257 0.66 0.929258
Target:  5'- aCCGGgaggCCUCcgacGUCgggGCGGCggaggccucggcGCGGCGg -3'
miRNA:   3'- -GGUCa---GGAGu---UAGa--CGUCGa-----------CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 49717 0.66 0.924998
Target:  5'- gUCGGaCCccgCGAUCaGCAGCUGC-GCGa -3'
miRNA:   3'- -GGUCaGGa--GUUAGaCGUCGACGcCGC- -5'
21633 3' -55.6 NC_004812.1 + 4225 0.66 0.924998
Target:  5'- gUCGGg-CUCGGgg-GCGGCgGCGGCGg -3'
miRNA:   3'- -GGUCagGAGUUagaCGUCGaCGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 73326 0.66 0.924998
Target:  5'- gCCuGcgCCUgGAUCcgcgUGCGGCgaGCGGCGc -3'
miRNA:   3'- -GGuCa-GGAgUUAG----ACGUCGa-CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 138696 0.66 0.924998
Target:  5'- aCCGGgCCUCGcgCccggacgaccGCGGC-GCGGCGg -3'
miRNA:   3'- -GGUCaGGAGUuaGa---------CGUCGaCGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 26173 0.66 0.919455
Target:  5'- uCCAGcgccgCCUCcgcgggCcGCAGCgaGCGGCGg -3'
miRNA:   3'- -GGUCa----GGAGuua---GaCGUCGa-CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 101143 0.66 0.919455
Target:  5'- cCCAGuaggcgagcgaUCC-CAGggagCUGCGGaagGCGGCGg -3'
miRNA:   3'- -GGUC-----------AGGaGUUa---GACGUCga-CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 55863 0.66 0.913673
Target:  5'- cUCGGUCUgguccUCUGCAGC-GCGGUu -3'
miRNA:   3'- -GGUCAGGaguu-AGACGUCGaCGCCGc -5'
21633 3' -55.6 NC_004812.1 + 119845 0.66 0.913673
Target:  5'- cUCAGUCC-CGuggcgCUGUaccaccAGCUGCGGaCGg -3'
miRNA:   3'- -GGUCAGGaGUua---GACG------UCGACGCC-GC- -5'
21633 3' -55.6 NC_004812.1 + 65576 0.66 0.913673
Target:  5'- aCCGacGUCCUCucccgGCAGCUGUcggaggccgacGGCGa -3'
miRNA:   3'- -GGU--CAGGAGuuagaCGUCGACG-----------CCGC- -5'
21633 3' -55.6 NC_004812.1 + 61761 0.66 0.913673
Target:  5'- aCAGcUCCgUCAGUC--CGGCgGCGGCGu -3'
miRNA:   3'- gGUC-AGG-AGUUAGacGUCGaCGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 91298 0.66 0.907651
Target:  5'- uCCGGUCCUUGAUggaggGCaccuGGUcGCGGCGg -3'
miRNA:   3'- -GGUCAGGAGUUAga---CG----UCGaCGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 141560 0.66 0.907651
Target:  5'- gCCAGUCCgccuccaGGUCccgGUgAGCgGCGGCGu -3'
miRNA:   3'- -GGUCAGGag-----UUAGa--CG-UCGaCGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 99384 0.66 0.907651
Target:  5'- gCAGcgCCgu-GUCgGC-GCUGCGGCGg -3'
miRNA:   3'- gGUCa-GGaguUAGaCGuCGACGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.