miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21633 3' -55.6 NC_004812.1 + 57932 1.1 0.002623
Target:  5'- gCCAGUCCUCAAUCUGCAGCUGCGGCGu -3'
miRNA:   3'- -GGUCAGGAGUUAGACGUCGACGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 35449 0.78 0.329158
Target:  5'- cCCGGcCCUCGcagcgCUGCAGCgccGCGGCGu -3'
miRNA:   3'- -GGUCaGGAGUua---GACGUCGa--CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 84686 0.77 0.360056
Target:  5'- gCC-GUCCUCGccgCUGCAGCgcccGCGGCGc -3'
miRNA:   3'- -GGuCAGGAGUua-GACGUCGa---CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 48240 0.75 0.47356
Target:  5'- cCCAGggCCUC---CUGCAGC-GCGGCGa -3'
miRNA:   3'- -GGUCa-GGAGuuaGACGUCGaCGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 99701 0.75 0.445718
Target:  5'- gCCAGggaCUCGGUC-GCGGCcGCGGCGu -3'
miRNA:   3'- -GGUCag-GAGUUAGaCGUCGaCGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 48144 0.73 0.541619
Target:  5'- gCC-GUCCUCGAggcGCGGCgccggGCGGCGg -3'
miRNA:   3'- -GGuCAGGAGUUagaCGUCGa----CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 116096 0.73 0.561693
Target:  5'- cCUGGUCCUUccuGGUgcugaagcccCUGCAGCUcGCGGCGa -3'
miRNA:   3'- -GGUCAGGAG---UUA----------GACGUCGA-CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 46254 0.73 0.541619
Target:  5'- uCguGUCCUCGAUCUcGgGGC-GCGGCa -3'
miRNA:   3'- -GguCAGGAGUUAGA-CgUCGaCGCCGc -5'
21633 3' -55.6 NC_004812.1 + 98380 0.72 0.633151
Target:  5'- aCgGGUCCUCGg---GCGGC-GCGGCGg -3'
miRNA:   3'- -GgUCAGGAGUuagaCGUCGaCGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 2031 0.72 0.60238
Target:  5'- gCCGGcgggCCUCGGUCgGCGGCggGgGGCGc -3'
miRNA:   3'- -GGUCa---GGAGUUAGaCGUCGa-CgCCGC- -5'
21633 3' -55.6 NC_004812.1 + 127540 0.72 0.60238
Target:  5'- gCCGGcgggCCUCGGUCgGCGGCggGgGGCGc -3'
miRNA:   3'- -GGUCa---GGAGUUAGaCGUCGa-CgCCGC- -5'
21633 3' -55.6 NC_004812.1 + 103321 0.72 0.643417
Target:  5'- aCCAcGUCCUCGGUCgaguucgcGCGGCUGCaGUu -3'
miRNA:   3'- -GGU-CAGGAGUUAGa-------CGUCGACGcCGc -5'
21633 3' -55.6 NC_004812.1 + 19668 0.71 0.653674
Target:  5'- -gGGUCCguggCGAUCUGCgcguucacguccAGCgcgGCGGCGc -3'
miRNA:   3'- ggUCAGGa---GUUAGACG------------UCGa--CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 28469 0.71 0.704526
Target:  5'- cCCGGUCCgCGGUCcaucccgGCGGCggGCGGgGa -3'
miRNA:   3'- -GGUCAGGaGUUAGa------CGUCGa-CGCCgC- -5'
21633 3' -55.6 NC_004812.1 + 48696 0.71 0.652648
Target:  5'- gCGGUCCUCuGUCUGUAccuguugcaccgcGCgUGCGGCc -3'
miRNA:   3'- gGUCAGGAGuUAGACGU-------------CG-ACGCCGc -5'
21633 3' -55.6 NC_004812.1 + 44172 0.7 0.718537
Target:  5'- cUCGGgggCCgagcCGGUCUGCGGCggggguggggcucgGCGGCGg -3'
miRNA:   3'- -GGUCa--GGa---GUUAGACGUCGa-------------CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 154014 0.7 0.724499
Target:  5'- -gAGUCCggugCcGUCgGCGGCgGCGGCGu -3'
miRNA:   3'- ggUCAGGa---GuUAGaCGUCGaCGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 127635 0.7 0.73437
Target:  5'- cCCAGUCC-CAGUCcggggagGCcccgcgggcggGGCUcGCGGCGg -3'
miRNA:   3'- -GGUCAGGaGUUAGa------CG-----------UCGA-CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 127599 0.7 0.724499
Target:  5'- aCCAGUCCUCGGg--GCGGCccggGCcGCGc -3'
miRNA:   3'- -GGUCAGGAGUUagaCGUCGa---CGcCGC- -5'
21633 3' -55.6 NC_004812.1 + 123113 0.7 0.724499
Target:  5'- -gAGUCCggugCcGUCgGCGGCgGCGGCGu -3'
miRNA:   3'- ggUCAGGa---GuUAGaCGUCGaCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.