miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21633 3' -55.6 NC_004812.1 + 21909 0.67 0.881227
Target:  5'- cCCGGUUCgcgCAGcCgGCGGCU-CGGCGg -3'
miRNA:   3'- -GGUCAGGa--GUUaGaCGUCGAcGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 56795 0.67 0.888178
Target:  5'- aCCGGcgCCguUCGcgCggcGCAGCUgGCGGCGc -3'
miRNA:   3'- -GGUCa-GG--AGUuaGa--CGUCGA-CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 109466 0.67 0.888178
Target:  5'- gCGGgggcgCCcgCGggCUGCGGCaucgUGCGGCGg -3'
miRNA:   3'- gGUCa----GGa-GUuaGACGUCG----ACGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 99614 0.67 0.894239
Target:  5'- uCCAGcuggagcUCCUCAGgcgCUGCgacccccggaucGGCcGCGGCa -3'
miRNA:   3'- -GGUC-------AGGAGUUa--GACG------------UCGaCGCCGc -5'
21633 3' -55.6 NC_004812.1 + 103193 0.67 0.894239
Target:  5'- cCCGGgcUCCUCGGUggccgcgCUGCGGacgaGCGGCa -3'
miRNA:   3'- -GGUC--AGGAGUUA-------GACGUCga--CGCCGc -5'
21633 3' -55.6 NC_004812.1 + 39138 0.67 0.894901
Target:  5'- gCCAGgCCUCGAUC-GCcuC-GCGGCGa -3'
miRNA:   3'- -GGUCaGGAGUUAGaCGucGaCGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 151682 0.67 0.894901
Target:  5'- uCCAGcgccgCCUCccgggCcGCAGCgaGCGGCGg -3'
miRNA:   3'- -GGUCa----GGAGuua--GaCGUCGa-CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 141560 0.66 0.907651
Target:  5'- gCCAGUCCgccuccaGGUCccgGUgAGCgGCGGCGu -3'
miRNA:   3'- -GGUCAGGag-----UUAGa--CG-UCGaCGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 91298 0.66 0.907651
Target:  5'- uCCGGUCCUUGAUggaggGCaccuGGUcGCGGCGg -3'
miRNA:   3'- -GGUCAGGAGUUAga---CG----UCGaCGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 72218 0.66 0.907651
Target:  5'- --cGUCCgCGGcCUcGCGGaCUGCGGCGg -3'
miRNA:   3'- gguCAGGaGUUaGA-CGUC-GACGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 99384 0.66 0.907651
Target:  5'- gCAGcgCCgu-GUCgGC-GCUGCGGCGg -3'
miRNA:   3'- gGUCa-GGaguUAGaCGuCGACGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 61761 0.66 0.913673
Target:  5'- aCAGcUCCgUCAGUC--CGGCgGCGGCGu -3'
miRNA:   3'- gGUC-AGG-AGUUAGacGUCGaCGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 65576 0.66 0.913673
Target:  5'- aCCGacGUCCUCucccgGCAGCUGUcggaggccgacGGCGa -3'
miRNA:   3'- -GGU--CAGGAGuuagaCGUCGACG-----------CCGC- -5'
21633 3' -55.6 NC_004812.1 + 119845 0.66 0.913673
Target:  5'- cUCAGUCC-CGuggcgCUGUaccaccAGCUGCGGaCGg -3'
miRNA:   3'- -GGUCAGGaGUua---GACG------UCGACGCC-GC- -5'
21633 3' -55.6 NC_004812.1 + 55863 0.66 0.913673
Target:  5'- cUCGGUCUgguccUCUGCAGC-GCGGUu -3'
miRNA:   3'- -GGUCAGGaguu-AGACGUCGaCGCCGc -5'
21633 3' -55.6 NC_004812.1 + 101143 0.66 0.919455
Target:  5'- cCCAGuaggcgagcgaUCC-CAGggagCUGCGGaagGCGGCGg -3'
miRNA:   3'- -GGUC-----------AGGaGUUa---GACGUCga-CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 26173 0.66 0.919455
Target:  5'- uCCAGcgccgCCUCcgcgggCcGCAGCgaGCGGCGg -3'
miRNA:   3'- -GGUCa----GGAGuua---GaCGUCGa-CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 73326 0.66 0.924998
Target:  5'- gCCuGcgCCUgGAUCcgcgUGCGGCgaGCGGCGc -3'
miRNA:   3'- -GGuCa-GGAgUUAG----ACGUCGa-CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 138696 0.66 0.924998
Target:  5'- aCCGGgCCUCGcgCccggacgaccGCGGC-GCGGCGg -3'
miRNA:   3'- -GGUCaGGAGUuaGa---------CGUCGaCGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 49717 0.66 0.924998
Target:  5'- gUCGGaCCccgCGAUCaGCAGCUGC-GCGa -3'
miRNA:   3'- -GGUCaGGa--GUUAGaCGUCGACGcCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.