Results 61 - 68 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21633 | 3' | -55.6 | NC_004812.1 | + | 138696 | 0.66 | 0.924998 |
Target: 5'- aCCGGgCCUCGcgCccggacgaccGCGGC-GCGGCGg -3' miRNA: 3'- -GGUCaGGAGUuaGa---------CGUCGaCGCCGC- -5' |
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21633 | 3' | -55.6 | NC_004812.1 | + | 13257 | 0.66 | 0.929258 |
Target: 5'- aCCGGgaggCCUCcgacGUCgggGCGGCggaggccucggcGCGGCGg -3' miRNA: 3'- -GGUCa---GGAGu---UAGa--CGUCGa-----------CGCCGC- -5' |
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21633 | 3' | -55.6 | NC_004812.1 | + | 136037 | 0.66 | 0.9303 |
Target: 5'- gCCGGUCCggucuggggaggUCcAUCaGCGGC-GCGGCc -3' miRNA: 3'- -GGUCAGG------------AGuUAGaCGUCGaCGCCGc -5' |
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21633 | 3' | -55.6 | NC_004812.1 | + | 153338 | 0.66 | 0.9303 |
Target: 5'- gCUGG-CCUCGcUCgccGCGcGCUGCGGCc -3' miRNA: 3'- -GGUCaGGAGUuAGa--CGU-CGACGCCGc -5' |
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21633 | 3' | -55.6 | NC_004812.1 | + | 27830 | 0.66 | 0.9303 |
Target: 5'- gCUGG-CCUCGcUCgccGCGcGCUGCGGCc -3' miRNA: 3'- -GGUCaGGAGUuAGa--CGU-CGACGCCGc -5' |
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21633 | 3' | -55.6 | NC_004812.1 | + | 50558 | 0.66 | 0.9303 |
Target: 5'- gCCAGUcucCCUCGGacccCUGCGucGCgccguugGCGGCGa -3' miRNA: 3'- -GGUCA---GGAGUUa---GACGU--CGa------CGCCGC- -5' |
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21633 | 3' | -55.6 | NC_004812.1 | + | 102904 | 0.66 | 0.9303 |
Target: 5'- cCCAagcgccCCUCGGUCUGCAcGCUgaccaaGUGGCa -3' miRNA: 3'- -GGUca----GGAGUUAGACGU-CGA------CGCCGc -5' |
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21633 | 3' | -55.6 | NC_004812.1 | + | 124445 | 0.66 | 0.9303 |
Target: 5'- cCCGGUCCgcgCGGgg-GCGccccGCcGCGGCGg -3' miRNA: 3'- -GGUCAGGa--GUUagaCGU----CGaCGCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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