miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21633 3' -55.6 NC_004812.1 + 141560 0.66 0.907651
Target:  5'- gCCAGUCCgccuccaGGUCccgGUgAGCgGCGGCGu -3'
miRNA:   3'- -GGUCAGGag-----UUAGa--CG-UCGaCGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 39138 0.67 0.894901
Target:  5'- gCCAGgCCUCGAUC-GCcuC-GCGGCGa -3'
miRNA:   3'- -GGUCaGGAGUUAGaCGucGaCGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 151682 0.67 0.894901
Target:  5'- uCCAGcgccgCCUCccgggCcGCAGCgaGCGGCGg -3'
miRNA:   3'- -GGUCa----GGAGuua--GaCGUCGa-CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 99614 0.67 0.894239
Target:  5'- uCCAGcuggagcUCCUCAGgcgCUGCgacccccggaucGGCcGCGGCa -3'
miRNA:   3'- -GGUC-------AGGAGUUa--GACG------------UCGaCGCCGc -5'
21633 3' -55.6 NC_004812.1 + 103193 0.67 0.894239
Target:  5'- cCCGGgcUCCUCGGUggccgcgCUGCGGacgaGCGGCa -3'
miRNA:   3'- -GGUC--AGGAGUUA-------GACGUCga--CGCCGc -5'
21633 3' -55.6 NC_004812.1 + 109466 0.67 0.888178
Target:  5'- gCGGgggcgCCcgCGggCUGCGGCaucgUGCGGCGg -3'
miRNA:   3'- gGUCa----GGa-GUuaGACGUCG----ACGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 56795 0.67 0.888178
Target:  5'- aCCGGcgCCguUCGcgCggcGCAGCUgGCGGCGc -3'
miRNA:   3'- -GGUCa-GG--AGUuaGa--CGUCGA-CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 21909 0.67 0.881227
Target:  5'- cCCGGUUCgcgCAGcCgGCGGCU-CGGCGg -3'
miRNA:   3'- -GGUCAGGa--GUUaGaCGUCGAcGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 126744 0.67 0.866663
Target:  5'- -gGGUCCUgGcggacggcuuGUCUGCGGCUGaCuGCGa -3'
miRNA:   3'- ggUCAGGAgU----------UAGACGUCGAC-GcCGC- -5'
21633 3' -55.6 NC_004812.1 + 48681 0.67 0.866663
Target:  5'- gCCGGccUCCUCGGggcgcUCUGUGGCUGgGGg- -3'
miRNA:   3'- -GGUC--AGGAGUU-----AGACGUCGACgCCgc -5'
21633 3' -55.6 NC_004812.1 + 100776 0.67 0.859059
Target:  5'- gCAGUCgC-CGAUCgUGCGGUgGCGGCc -3'
miRNA:   3'- gGUCAG-GaGUUAG-ACGUCGaCGCCGc -5'
21633 3' -55.6 NC_004812.1 + 96975 0.67 0.859059
Target:  5'- aCCAc-CCUCA---UGCGGCUGCGGgGc -3'
miRNA:   3'- -GGUcaGGAGUuagACGUCGACGCCgC- -5'
21633 3' -55.6 NC_004812.1 + 121878 0.68 0.851249
Target:  5'- cCCAGgacggCGAUCgGCGGCUGcCGGUGu -3'
miRNA:   3'- -GGUCagga-GUUAGaCGUCGAC-GCCGC- -5'
21633 3' -55.6 NC_004812.1 + 98731 0.68 0.851249
Target:  5'- --cGUUCUCGcgCggggGCAGCgcccccgGCGGCGa -3'
miRNA:   3'- gguCAGGAGUuaGa---CGUCGa------CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 21073 0.68 0.84324
Target:  5'- -gGGUCCg-AGUCcGCGGCggccgagGCGGCGa -3'
miRNA:   3'- ggUCAGGagUUAGaCGUCGa------CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 36690 0.68 0.84324
Target:  5'- gUCGGcgcccgCCUCGggCUGCggGGCUGCGGgGc -3'
miRNA:   3'- -GGUCa-----GGAGUuaGACG--UCGACGCCgC- -5'
21633 3' -55.6 NC_004812.1 + 5789 0.68 0.84324
Target:  5'- gUCGGcgcccgCCUCGggCUGCggGGCUGCGGgGc -3'
miRNA:   3'- -GGUCa-----GGAGUuaGACG--UCGACGCCgC- -5'
21633 3' -55.6 NC_004812.1 + 126914 0.68 0.835037
Target:  5'- cCCAGUCgUCGugcGUCccugGCGGUUucucGCGGCGu -3'
miRNA:   3'- -GGUCAGgAGU---UAGa---CGUCGA----CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 38358 0.68 0.826648
Target:  5'- uCCAGgaacUCCUC---CUGCAgGCggGCGGCGg -3'
miRNA:   3'- -GGUC----AGGAGuuaGACGU-CGa-CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 76086 0.68 0.824097
Target:  5'- cCCGGUCCgCGagcuucuccgccagGUCcGCGGCgGCGGCc -3'
miRNA:   3'- -GGUCAGGaGU--------------UAGaCGUCGaCGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.