Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 21633 | 3' | -55.6 | NC_004812.1 | + | 116096 | 0.73 | 0.561693 |
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Target: 5'- cCUGGUCCUUccuGGUgcugaagcccCUGCAGCUcGCGGCGa -3' miRNA: 3'- -GGUCAGGAG---UUA----------GACGUCGA-CGCCGC- -5' |
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| 21633 | 3' | -55.6 | NC_004812.1 | + | 48144 | 0.73 | 0.541619 |
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Target: 5'- gCC-GUCCUCGAggcGCGGCgccggGCGGCGg -3' miRNA: 3'- -GGuCAGGAGUUagaCGUCGa----CGCCGC- -5' |
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| 21633 | 3' | -55.6 | NC_004812.1 | + | 46254 | 0.73 | 0.541619 |
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Target: 5'- uCguGUCCUCGAUCUcGgGGC-GCGGCa -3' miRNA: 3'- -GguCAGGAGUUAGA-CgUCGaCGCCGc -5' |
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| 21633 | 3' | -55.6 | NC_004812.1 | + | 48240 | 0.75 | 0.47356 |
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Target: 5'- cCCAGggCCUC---CUGCAGC-GCGGCGa -3' miRNA: 3'- -GGUCa-GGAGuuaGACGUCGaCGCCGC- -5' |
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| 21633 | 3' | -55.6 | NC_004812.1 | + | 99701 | 0.75 | 0.445718 |
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Target: 5'- gCCAGggaCUCGGUC-GCGGCcGCGGCGu -3' miRNA: 3'- -GGUCag-GAGUUAGaCGUCGaCGCCGC- -5' |
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| 21633 | 3' | -55.6 | NC_004812.1 | + | 84686 | 0.77 | 0.360056 |
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Target: 5'- gCC-GUCCUCGccgCUGCAGCgcccGCGGCGc -3' miRNA: 3'- -GGuCAGGAGUua-GACGUCGa---CGCCGC- -5' |
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| 21633 | 3' | -55.6 | NC_004812.1 | + | 35449 | 0.78 | 0.329158 |
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Target: 5'- cCCGGcCCUCGcagcgCUGCAGCgccGCGGCGu -3' miRNA: 3'- -GGUCaGGAGUua---GACGUCGa--CGCCGC- -5' |
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| 21633 | 3' | -55.6 | NC_004812.1 | + | 57932 | 1.1 | 0.002623 |
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Target: 5'- gCCAGUCCUCAAUCUGCAGCUGCGGCGu -3' miRNA: 3'- -GGUCAGGAGUUAGACGUCGACGCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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