miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21633 3' -55.6 NC_004812.1 + 2031 0.72 0.60238
Target:  5'- gCCGGcgggCCUCGGUCgGCGGCggGgGGCGc -3'
miRNA:   3'- -GGUCa---GGAGUUAGaCGUCGa-CgCCGC- -5'
21633 3' -55.6 NC_004812.1 + 2090 0.7 0.724499
Target:  5'- aCCAGUCCUCGGg--GCGGCccggGCcGCGc -3'
miRNA:   3'- -GGUCAGGAGUUagaCGUCGa---CGcCGC- -5'
21633 3' -55.6 NC_004812.1 + 2126 0.7 0.73437
Target:  5'- cCCAGUCC-CAGUCcggggagGCcccgcgggcggGGCUcGCGGCGg -3'
miRNA:   3'- -GGUCAGGaGUUAGa------CG-----------UCGA-CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 4225 0.66 0.924998
Target:  5'- gUCGGg-CUCGGgg-GCGGCgGCGGCGg -3'
miRNA:   3'- -GGUCagGAGUUagaCGUCGaCGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 5789 0.68 0.84324
Target:  5'- gUCGGcgcccgCCUCGggCUGCggGGCUGCGGgGc -3'
miRNA:   3'- -GGUCa-----GGAGUuaGACG--UCGACGCCgC- -5'
21633 3' -55.6 NC_004812.1 + 13257 0.66 0.929258
Target:  5'- aCCGGgaggCCUCcgacGUCgggGCGGCggaggccucggcGCGGCGg -3'
miRNA:   3'- -GGUCa---GGAGu---UAGa--CGUCGa-----------CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 16179 0.69 0.800447
Target:  5'- aCUGGgggCgCUCGAUCgccaGCAGCgcGCGGCGg -3'
miRNA:   3'- -GGUCa--G-GAGUUAGa---CGUCGa-CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 19668 0.71 0.653674
Target:  5'- -gGGUCCguggCGAUCUGCgcguucacguccAGCgcgGCGGCGc -3'
miRNA:   3'- ggUCAGGa---GUUAGACG------------UCGa--CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 21073 0.68 0.84324
Target:  5'- -gGGUCCg-AGUCcGCGGCggccgagGCGGCGa -3'
miRNA:   3'- ggUCAGGagUUAGaCGUCGa------CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 21909 0.67 0.881227
Target:  5'- cCCGGUUCgcgCAGcCgGCGGCU-CGGCGg -3'
miRNA:   3'- -GGUCAGGa--GUUaGaCGUCGAcGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 26173 0.66 0.919455
Target:  5'- uCCAGcgccgCCUCcgcgggCcGCAGCgaGCGGCGg -3'
miRNA:   3'- -GGUCa----GGAGuua---GaCGUCGa-CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 27830 0.66 0.9303
Target:  5'- gCUGG-CCUCGcUCgccGCGcGCUGCGGCc -3'
miRNA:   3'- -GGUCaGGAGUuAGa--CGU-CGACGCCGc -5'
21633 3' -55.6 NC_004812.1 + 28469 0.71 0.704526
Target:  5'- cCCGGUCCgCGGUCcaucccgGCGGCggGCGGgGa -3'
miRNA:   3'- -GGUCAGGaGUUAGa------CGUCGa-CGCCgC- -5'
21633 3' -55.6 NC_004812.1 + 35449 0.78 0.329158
Target:  5'- cCCGGcCCUCGcagcgCUGCAGCgccGCGGCGu -3'
miRNA:   3'- -GGUCaGGAGUua---GACGUCGa--CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 36690 0.68 0.84324
Target:  5'- gUCGGcgcccgCCUCGggCUGCggGGCUGCGGgGc -3'
miRNA:   3'- -GGUCa-----GGAGUuaGACG--UCGACGCCgC- -5'
21633 3' -55.6 NC_004812.1 + 38358 0.68 0.826648
Target:  5'- uCCAGgaacUCCUC---CUGCAgGCggGCGGCGg -3'
miRNA:   3'- -GGUC----AGGAGuuaGACGU-CGa-CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 39138 0.67 0.894901
Target:  5'- gCCAGgCCUCGAUC-GCcuC-GCGGCGa -3'
miRNA:   3'- -GGUCaGGAGUUAGaCGucGaCGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 41862 0.69 0.791396
Target:  5'- aCAGUCC-CGGgagaacgggCUGCGGCaGUGGCa -3'
miRNA:   3'- gGUCAGGaGUUa--------GACGUCGaCGCCGc -5'
21633 3' -55.6 NC_004812.1 + 43613 0.7 0.744152
Target:  5'- --cGUCCUCugccUCgGCGGCcGCGGCGc -3'
miRNA:   3'- gguCAGGAGuu--AGaCGUCGaCGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 44172 0.7 0.718537
Target:  5'- cUCGGgggCCgagcCGGUCUGCGGCggggguggggcucgGCGGCGg -3'
miRNA:   3'- -GGUCa--GGa---GUUAGACGUCGa-------------CGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.