miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21633 3' -55.6 NC_004812.1 + 46254 0.73 0.541619
Target:  5'- uCguGUCCUCGAUCUcGgGGC-GCGGCa -3'
miRNA:   3'- -GguCAGGAGUUAGA-CgUCGaCGCCGc -5'
21633 3' -55.6 NC_004812.1 + 48144 0.73 0.541619
Target:  5'- gCC-GUCCUCGAggcGCGGCgccggGCGGCGg -3'
miRNA:   3'- -GGuCAGGAGUUagaCGUCGa----CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 48240 0.75 0.47356
Target:  5'- cCCAGggCCUC---CUGCAGC-GCGGCGa -3'
miRNA:   3'- -GGUCa-GGAGuuaGACGUCGaCGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 48681 0.67 0.866663
Target:  5'- gCCGGccUCCUCGGggcgcUCUGUGGCUGgGGg- -3'
miRNA:   3'- -GGUC--AGGAGUU-----AGACGUCGACgCCgc -5'
21633 3' -55.6 NC_004812.1 + 48696 0.71 0.652648
Target:  5'- gCGGUCCUCuGUCUGUAccuguugcaccgcGCgUGCGGCc -3'
miRNA:   3'- gGUCAGGAGuUAGACGU-------------CG-ACGCCGc -5'
21633 3' -55.6 NC_004812.1 + 49717 0.66 0.924998
Target:  5'- gUCGGaCCccgCGAUCaGCAGCUGC-GCGa -3'
miRNA:   3'- -GGUCaGGa--GUUAGaCGUCGACGcCGC- -5'
21633 3' -55.6 NC_004812.1 + 50558 0.66 0.9303
Target:  5'- gCCAGUcucCCUCGGacccCUGCGucGCgccguugGCGGCGa -3'
miRNA:   3'- -GGUCA---GGAGUUa---GACGU--CGa------CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 55863 0.66 0.913673
Target:  5'- cUCGGUCUgguccUCUGCAGC-GCGGUu -3'
miRNA:   3'- -GGUCAGGaguu-AGACGUCGaCGCCGc -5'
21633 3' -55.6 NC_004812.1 + 56795 0.67 0.888178
Target:  5'- aCCGGcgCCguUCGcgCggcGCAGCUgGCGGCGc -3'
miRNA:   3'- -GGUCa-GG--AGUuaGa--CGUCGA-CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 57932 1.1 0.002623
Target:  5'- gCCAGUCCUCAAUCUGCAGCUGCGGCGu -3'
miRNA:   3'- -GGUCAGGAGUUAGACGUCGACGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 61761 0.66 0.913673
Target:  5'- aCAGcUCCgUCAGUC--CGGCgGCGGCGu -3'
miRNA:   3'- gGUC-AGG-AGUUAGacGUCGaCGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 65576 0.66 0.913673
Target:  5'- aCCGacGUCCUCucccgGCAGCUGUcggaggccgacGGCGa -3'
miRNA:   3'- -GGU--CAGGAGuuagaCGUCGACG-----------CCGC- -5'
21633 3' -55.6 NC_004812.1 + 72218 0.66 0.907651
Target:  5'- --cGUCCgCGGcCUcGCGGaCUGCGGCGg -3'
miRNA:   3'- gguCAGGaGUUaGA-CGUC-GACGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 73326 0.66 0.924998
Target:  5'- gCCuGcgCCUgGAUCcgcgUGCGGCgaGCGGCGc -3'
miRNA:   3'- -GGuCa-GGAgUUAG----ACGUCGa-CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 76086 0.68 0.824097
Target:  5'- cCCGGUCCgCGagcuucuccgccagGUCcGCGGCgGCGGCc -3'
miRNA:   3'- -GGUCAGGaGU--------------UAGaCGUCGaCGCCGc -5'
21633 3' -55.6 NC_004812.1 + 81564 0.69 0.797747
Target:  5'- aUCGcGUCCUCAAUCUGCuugacgagggggucGGCUcgGGCGa -3'
miRNA:   3'- -GGU-CAGGAGUUAGACG--------------UCGAcgCCGC- -5'
21633 3' -55.6 NC_004812.1 + 84686 0.77 0.360056
Target:  5'- gCC-GUCCUCGccgCUGCAGCgcccGCGGCGc -3'
miRNA:   3'- -GGuCAGGAGUua-GACGUCGa---CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 87027 0.68 0.818082
Target:  5'- aCCGccGUCgcgCUCGGag-GCGGCUGCGGCGc -3'
miRNA:   3'- -GGU--CAG---GAGUUagaCGUCGACGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 91298 0.66 0.907651
Target:  5'- uCCGGUCCUUGAUggaggGCaccuGGUcGCGGCGg -3'
miRNA:   3'- -GGUCAGGAGUUAga---CG----UCGaCGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 96975 0.67 0.859059
Target:  5'- aCCAc-CCUCA---UGCGGCUGCGGgGc -3'
miRNA:   3'- -GGUcaGGAGUuagACGUCGACGCCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.