miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21633 3' -55.6 NC_004812.1 + 154014 0.7 0.724499
Target:  5'- -gAGUCCggugCcGUCgGCGGCgGCGGCGu -3'
miRNA:   3'- ggUCAGGa---GuUAGaCGUCGaCGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 153338 0.66 0.9303
Target:  5'- gCUGG-CCUCGcUCgccGCGcGCUGCGGCc -3'
miRNA:   3'- -GGUCaGGAGUuAGa--CGU-CGACGCCGc -5'
21633 3' -55.6 NC_004812.1 + 151682 0.67 0.894901
Target:  5'- uCCAGcgccgCCUCccgggCcGCAGCgaGCGGCGg -3'
miRNA:   3'- -GGUCa----GGAGuua--GaCGUCGa-CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 141560 0.66 0.907651
Target:  5'- gCCAGUCCgccuccaGGUCccgGUgAGCgGCGGCGu -3'
miRNA:   3'- -GGUCAGGag-----UUAGa--CG-UCGaCGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 138696 0.66 0.924998
Target:  5'- aCCGGgCCUCGcgCccggacgaccGCGGC-GCGGCGg -3'
miRNA:   3'- -GGUCaGGAGUuaGa---------CGUCGaCGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 136037 0.66 0.9303
Target:  5'- gCCGGUCCggucuggggaggUCcAUCaGCGGC-GCGGCc -3'
miRNA:   3'- -GGUCAGG------------AGuUAGaCGUCGaCGCCGc -5'
21633 3' -55.6 NC_004812.1 + 127635 0.7 0.73437
Target:  5'- cCCAGUCC-CAGUCcggggagGCcccgcgggcggGGCUcGCGGCGg -3'
miRNA:   3'- -GGUCAGGaGUUAGa------CG-----------UCGA-CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 127599 0.7 0.724499
Target:  5'- aCCAGUCCUCGGg--GCGGCccggGCcGCGc -3'
miRNA:   3'- -GGUCAGGAGUUagaCGUCGa---CGcCGC- -5'
21633 3' -55.6 NC_004812.1 + 127540 0.72 0.60238
Target:  5'- gCCGGcgggCCUCGGUCgGCGGCggGgGGCGc -3'
miRNA:   3'- -GGUCa---GGAGUUAGaCGUCGa-CgCCGC- -5'
21633 3' -55.6 NC_004812.1 + 126914 0.68 0.835037
Target:  5'- cCCAGUCgUCGugcGUCccugGCGGUUucucGCGGCGu -3'
miRNA:   3'- -GGUCAGgAGU---UAGa---CGUCGA----CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 126744 0.67 0.866663
Target:  5'- -gGGUCCUgGcggacggcuuGUCUGCGGCUGaCuGCGa -3'
miRNA:   3'- ggUCAGGAgU----------UAGACGUCGAC-GcCGC- -5'
21633 3' -55.6 NC_004812.1 + 124445 0.66 0.9303
Target:  5'- cCCGGUCCgcgCGGgg-GCGccccGCcGCGGCGg -3'
miRNA:   3'- -GGUCAGGa--GUUagaCGU----CGaCGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 123113 0.7 0.724499
Target:  5'- -gAGUCCggugCcGUCgGCGGCgGCGGCGu -3'
miRNA:   3'- ggUCAGGa---GuUAGaCGUCGaCGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 121878 0.68 0.851249
Target:  5'- cCCAGgacggCGAUCgGCGGCUGcCGGUGu -3'
miRNA:   3'- -GGUCagga-GUUAGaCGUCGAC-GCCGC- -5'
21633 3' -55.6 NC_004812.1 + 119845 0.66 0.913673
Target:  5'- cUCAGUCC-CGuggcgCUGUaccaccAGCUGCGGaCGg -3'
miRNA:   3'- -GGUCAGGaGUua---GACG------UCGACGCC-GC- -5'
21633 3' -55.6 NC_004812.1 + 119471 0.69 0.809346
Target:  5'- aCGGcCCUCc-UCUGC-GCcGCGGCGg -3'
miRNA:   3'- gGUCaGGAGuuAGACGuCGaCGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 116096 0.73 0.561693
Target:  5'- cCUGGUCCUUccuGGUgcugaagcccCUGCAGCUcGCGGCGa -3'
miRNA:   3'- -GGUCAGGAG---UUA----------GACGUCGA-CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 109466 0.67 0.888178
Target:  5'- gCGGgggcgCCcgCGggCUGCGGCaucgUGCGGCGg -3'
miRNA:   3'- gGUCa----GGa-GUuaGACGUCG----ACGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 103321 0.72 0.643417
Target:  5'- aCCAcGUCCUCGGUCgaguucgcGCGGCUGCaGUu -3'
miRNA:   3'- -GGU-CAGGAGUUAGa-------CGUCGACGcCGc -5'
21633 3' -55.6 NC_004812.1 + 103193 0.67 0.894239
Target:  5'- cCCGGgcUCCUCGGUggccgcgCUGCGGacgaGCGGCa -3'
miRNA:   3'- -GGUC--AGGAGUUA-------GACGUCga--CGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.