miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21633 3' -55.6 NC_004812.1 + 55863 0.66 0.913673
Target:  5'- cUCGGUCUgguccUCUGCAGC-GCGGUu -3'
miRNA:   3'- -GGUCAGGaguu-AGACGUCGaCGCCGc -5'
21633 3' -55.6 NC_004812.1 + 50558 0.66 0.9303
Target:  5'- gCCAGUcucCCUCGGacccCUGCGucGCgccguugGCGGCGa -3'
miRNA:   3'- -GGUCA---GGAGUUa---GACGU--CGa------CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 49717 0.66 0.924998
Target:  5'- gUCGGaCCccgCGAUCaGCAGCUGC-GCGa -3'
miRNA:   3'- -GGUCaGGa--GUUAGaCGUCGACGcCGC- -5'
21633 3' -55.6 NC_004812.1 + 48696 0.71 0.652648
Target:  5'- gCGGUCCUCuGUCUGUAccuguugcaccgcGCgUGCGGCc -3'
miRNA:   3'- gGUCAGGAGuUAGACGU-------------CG-ACGCCGc -5'
21633 3' -55.6 NC_004812.1 + 48681 0.67 0.866663
Target:  5'- gCCGGccUCCUCGGggcgcUCUGUGGCUGgGGg- -3'
miRNA:   3'- -GGUC--AGGAGUU-----AGACGUCGACgCCgc -5'
21633 3' -55.6 NC_004812.1 + 48240 0.75 0.47356
Target:  5'- cCCAGggCCUC---CUGCAGC-GCGGCGa -3'
miRNA:   3'- -GGUCa-GGAGuuaGACGUCGaCGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 48144 0.73 0.541619
Target:  5'- gCC-GUCCUCGAggcGCGGCgccggGCGGCGg -3'
miRNA:   3'- -GGuCAGGAGUUagaCGUCGa----CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 46254 0.73 0.541619
Target:  5'- uCguGUCCUCGAUCUcGgGGC-GCGGCa -3'
miRNA:   3'- -GguCAGGAGUUAGA-CgUCGaCGCCGc -5'
21633 3' -55.6 NC_004812.1 + 44172 0.7 0.718537
Target:  5'- cUCGGgggCCgagcCGGUCUGCGGCggggguggggcucgGCGGCGg -3'
miRNA:   3'- -GGUCa--GGa---GUUAGACGUCGa-------------CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 43613 0.7 0.744152
Target:  5'- --cGUCCUCugccUCgGCGGCcGCGGCGc -3'
miRNA:   3'- gguCAGGAGuu--AGaCGUCGaCGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 41862 0.69 0.791396
Target:  5'- aCAGUCC-CGGgagaacgggCUGCGGCaGUGGCa -3'
miRNA:   3'- gGUCAGGaGUUa--------GACGUCGaCGCCGc -5'
21633 3' -55.6 NC_004812.1 + 39138 0.67 0.894901
Target:  5'- gCCAGgCCUCGAUC-GCcuC-GCGGCGa -3'
miRNA:   3'- -GGUCaGGAGUUAGaCGucGaCGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 38358 0.68 0.826648
Target:  5'- uCCAGgaacUCCUC---CUGCAgGCggGCGGCGg -3'
miRNA:   3'- -GGUC----AGGAGuuaGACGU-CGa-CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 36690 0.68 0.84324
Target:  5'- gUCGGcgcccgCCUCGggCUGCggGGCUGCGGgGc -3'
miRNA:   3'- -GGUCa-----GGAGUuaGACG--UCGACGCCgC- -5'
21633 3' -55.6 NC_004812.1 + 35449 0.78 0.329158
Target:  5'- cCCGGcCCUCGcagcgCUGCAGCgccGCGGCGu -3'
miRNA:   3'- -GGUCaGGAGUua---GACGUCGa--CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 28469 0.71 0.704526
Target:  5'- cCCGGUCCgCGGUCcaucccgGCGGCggGCGGgGa -3'
miRNA:   3'- -GGUCAGGaGUUAGa------CGUCGa-CGCCgC- -5'
21633 3' -55.6 NC_004812.1 + 27830 0.66 0.9303
Target:  5'- gCUGG-CCUCGcUCgccGCGcGCUGCGGCc -3'
miRNA:   3'- -GGUCaGGAGUuAGa--CGU-CGACGCCGc -5'
21633 3' -55.6 NC_004812.1 + 26173 0.66 0.919455
Target:  5'- uCCAGcgccgCCUCcgcgggCcGCAGCgaGCGGCGg -3'
miRNA:   3'- -GGUCa----GGAGuua---GaCGUCGa-CGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 21909 0.67 0.881227
Target:  5'- cCCGGUUCgcgCAGcCgGCGGCU-CGGCGg -3'
miRNA:   3'- -GGUCAGGa--GUUaGaCGUCGAcGCCGC- -5'
21633 3' -55.6 NC_004812.1 + 21073 0.68 0.84324
Target:  5'- -gGGUCCg-AGUCcGCGGCggccgagGCGGCGa -3'
miRNA:   3'- ggUCAGGagUUAGaCGUCGa------CGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.