Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21633 | 3' | -55.6 | NC_004812.1 | + | 126744 | 0.67 | 0.866663 |
Target: 5'- -gGGUCCUgGcggacggcuuGUCUGCGGCUGaCuGCGa -3' miRNA: 3'- ggUCAGGAgU----------UAGACGUCGAC-GcCGC- -5' |
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21633 | 3' | -55.6 | NC_004812.1 | + | 127635 | 0.7 | 0.73437 |
Target: 5'- cCCAGUCC-CAGUCcggggagGCcccgcgggcggGGCUcGCGGCGg -3' miRNA: 3'- -GGUCAGGaGUUAGa------CG-----------UCGA-CGCCGC- -5' |
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21633 | 3' | -55.6 | NC_004812.1 | + | 81564 | 0.69 | 0.797747 |
Target: 5'- aUCGcGUCCUCAAUCUGCuugacgagggggucGGCUcgGGCGa -3' miRNA: 3'- -GGU-CAGGAGUUAGACG--------------UCGAcgCCGC- -5' |
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21633 | 3' | -55.6 | NC_004812.1 | + | 16179 | 0.69 | 0.800447 |
Target: 5'- aCUGGgggCgCUCGAUCgccaGCAGCgcGCGGCGg -3' miRNA: 3'- -GGUCa--G-GAGUUAGa---CGUCGa-CGCCGC- -5' |
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21633 | 3' | -55.6 | NC_004812.1 | + | 76086 | 0.68 | 0.824097 |
Target: 5'- cCCGGUCCgCGagcuucuccgccagGUCcGCGGCgGCGGCc -3' miRNA: 3'- -GGUCAGGaGU--------------UAGaCGUCGaCGCCGc -5' |
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21633 | 3' | -55.6 | NC_004812.1 | + | 38358 | 0.68 | 0.826648 |
Target: 5'- uCCAGgaacUCCUC---CUGCAgGCggGCGGCGg -3' miRNA: 3'- -GGUC----AGGAGuuaGACGU-CGa-CGCCGC- -5' |
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21633 | 3' | -55.6 | NC_004812.1 | + | 5789 | 0.68 | 0.84324 |
Target: 5'- gUCGGcgcccgCCUCGggCUGCggGGCUGCGGgGc -3' miRNA: 3'- -GGUCa-----GGAGUuaGACG--UCGACGCCgC- -5' |
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21633 | 3' | -55.6 | NC_004812.1 | + | 98731 | 0.68 | 0.851249 |
Target: 5'- --cGUUCUCGcgCggggGCAGCgcccccgGCGGCGa -3' miRNA: 3'- gguCAGGAGUuaGa---CGUCGa------CGCCGC- -5' |
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21633 | 3' | -55.6 | NC_004812.1 | + | 100776 | 0.67 | 0.859059 |
Target: 5'- gCAGUCgC-CGAUCgUGCGGUgGCGGCc -3' miRNA: 3'- gGUCAG-GaGUUAG-ACGUCGaCGCCGc -5' |
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21633 | 3' | -55.6 | NC_004812.1 | + | 127599 | 0.7 | 0.724499 |
Target: 5'- aCCAGUCCUCGGg--GCGGCccggGCcGCGc -3' miRNA: 3'- -GGUCAGGAGUUagaCGUCGa---CGcCGC- -5' |
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21633 | 3' | -55.6 | NC_004812.1 | + | 123113 | 0.7 | 0.724499 |
Target: 5'- -gAGUCCggugCcGUCgGCGGCgGCGGCGu -3' miRNA: 3'- ggUCAGGa---GuUAGaCGUCGaCGCCGC- -5' |
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21633 | 3' | -55.6 | NC_004812.1 | + | 28469 | 0.71 | 0.704526 |
Target: 5'- cCCGGUCCgCGGUCcaucccgGCGGCggGCGGgGa -3' miRNA: 3'- -GGUCAGGaGUUAGa------CGUCGa-CGCCgC- -5' |
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21633 | 3' | -55.6 | NC_004812.1 | + | 35449 | 0.78 | 0.329158 |
Target: 5'- cCCGGcCCUCGcagcgCUGCAGCgccGCGGCGu -3' miRNA: 3'- -GGUCaGGAGUua---GACGUCGa--CGCCGC- -5' |
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21633 | 3' | -55.6 | NC_004812.1 | + | 99701 | 0.75 | 0.445718 |
Target: 5'- gCCAGggaCUCGGUC-GCGGCcGCGGCGu -3' miRNA: 3'- -GGUCag-GAGUUAGaCGUCGaCGCCGC- -5' |
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21633 | 3' | -55.6 | NC_004812.1 | + | 46254 | 0.73 | 0.541619 |
Target: 5'- uCguGUCCUCGAUCUcGgGGC-GCGGCa -3' miRNA: 3'- -GguCAGGAGUUAGA-CgUCGaCGCCGc -5' |
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21633 | 3' | -55.6 | NC_004812.1 | + | 48144 | 0.73 | 0.541619 |
Target: 5'- gCC-GUCCUCGAggcGCGGCgccggGCGGCGg -3' miRNA: 3'- -GGuCAGGAGUUagaCGUCGa----CGCCGC- -5' |
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21633 | 3' | -55.6 | NC_004812.1 | + | 127540 | 0.72 | 0.60238 |
Target: 5'- gCCGGcgggCCUCGGUCgGCGGCggGgGGCGc -3' miRNA: 3'- -GGUCa---GGAGUUAGaCGUCGa-CgCCGC- -5' |
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21633 | 3' | -55.6 | NC_004812.1 | + | 98380 | 0.72 | 0.633151 |
Target: 5'- aCgGGUCCUCGg---GCGGC-GCGGCGg -3' miRNA: 3'- -GgUCAGGAGUuagaCGUCGaCGCCGC- -5' |
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21633 | 3' | -55.6 | NC_004812.1 | + | 48696 | 0.71 | 0.652648 |
Target: 5'- gCGGUCCUCuGUCUGUAccuguugcaccgcGCgUGCGGCc -3' miRNA: 3'- gGUCAGGAGuUAGACGU-------------CG-ACGCCGc -5' |
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21633 | 3' | -55.6 | NC_004812.1 | + | 19668 | 0.71 | 0.653674 |
Target: 5'- -gGGUCCguggCGAUCUGCgcguucacguccAGCgcgGCGGCGc -3' miRNA: 3'- ggUCAGGa---GUUAGACG------------UCGa--CGCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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