miRNA display CGI


Results 1 - 20 of 717 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21633 5' -60 NC_004812.1 + 135992 0.66 0.753159
Target:  5'- --uGCGGCGcGUgACGGACGCccugagcgGGCGCc -3'
miRNA:   3'- aagUGCCGC-CGgUGCUUGUG--------CCGCGa -5'
21633 5' -60 NC_004812.1 + 38598 0.66 0.753159
Target:  5'- -gCGCGGgGGUCGCGccgagucCGCGGCGg- -3'
miRNA:   3'- aaGUGCCgCCGGUGCuu-----GUGCCGCga -5'
21633 5' -60 NC_004812.1 + 68821 0.66 0.753159
Target:  5'- ----aGGCGGCCACGAGCGaguccaGG-GCc -3'
miRNA:   3'- aagugCCGCCGGUGCUUGUg-----CCgCGa -5'
21633 5' -60 NC_004812.1 + 54514 0.66 0.753159
Target:  5'- gUCGCguGGcCGGCCucgACGGACGCguuggugcccGGCGCg -3'
miRNA:   3'- aAGUG--CC-GCCGG---UGCUUGUG----------CCGCGa -5'
21633 5' -60 NC_004812.1 + 107601 0.66 0.753159
Target:  5'- --gAUGGUGGCCAgGcACguguccgccagGCGGCGCa -3'
miRNA:   3'- aagUGCCGCCGGUgCuUG-----------UGCCGCGa -5'
21633 5' -60 NC_004812.1 + 60179 0.66 0.753159
Target:  5'- --gGCGGCucgucaaagacGGCCAUGGACAUGaGCGaCUc -3'
miRNA:   3'- aagUGCCG-----------CCGGUGCUUGUGC-CGC-GA- -5'
21633 5' -60 NC_004812.1 + 153357 0.66 0.753159
Target:  5'- --gGCGGCGGgggCGCGGGCGCcccuggcgGGCGCc -3'
miRNA:   3'- aagUGCCGCCg--GUGCUUGUG--------CCGCGa -5'
21633 5' -60 NC_004812.1 + 7697 0.66 0.753159
Target:  5'- -gCGCGGgGGUCGCGccgagucCGCGGCGg- -3'
miRNA:   3'- aaGUGCCgCCGGUGCuu-----GUGCCGCga -5'
21633 5' -60 NC_004812.1 + 36135 0.66 0.753159
Target:  5'- -gCugGGaGGcCCACGggUuggccgugGCGGCGCa -3'
miRNA:   3'- aaGugCCgCC-GGUGCuuG--------UGCCGCGa -5'
21633 5' -60 NC_004812.1 + 71564 0.66 0.753159
Target:  5'- -gCAC-GCGGCCACGAggaaguucagcgACACGagccccGCGCg -3'
miRNA:   3'- aaGUGcCGCCGGUGCU------------UGUGC------CGCGa -5'
21633 5' -60 NC_004812.1 + 9767 0.66 0.753159
Target:  5'- -cCGCGGCGcGCCgGCGGccGCGCGGguguccCGCg -3'
miRNA:   3'- aaGUGCCGC-CGG-UGCU--UGUGCC------GCGa -5'
21633 5' -60 NC_004812.1 + 77500 0.66 0.753159
Target:  5'- -gCcCGGCgGGCCACuuccuGCACGuGCGCg -3'
miRNA:   3'- aaGuGCCG-CCGGUGcu---UGUGC-CGCGa -5'
21633 5' -60 NC_004812.1 + 118536 0.66 0.753159
Target:  5'- -gCGCGG-GGCCugGAGCuCaGCGUg -3'
miRNA:   3'- aaGUGCCgCCGGugCUUGuGcCGCGa -5'
21633 5' -60 NC_004812.1 + 55478 0.66 0.753159
Target:  5'- -gCAC-GCGcGCCGCGAagccguucgACACGGcCGCg -3'
miRNA:   3'- aaGUGcCGC-CGGUGCU---------UGUGCC-GCGa -5'
21633 5' -60 NC_004812.1 + 122456 0.66 0.753159
Target:  5'- --gGCGGCGGgggCGCGGGCGCcccuggcgGGCGCc -3'
miRNA:   3'- aagUGCCGCCg--GUGCUUGUG--------CCGCGa -5'
21633 5' -60 NC_004812.1 + 62930 0.66 0.753159
Target:  5'- --gACGGCGGUgGCGAGgGCGacaCGCg -3'
miRNA:   3'- aagUGCCGCCGgUGCUUgUGCc--GCGa -5'
21633 5' -60 NC_004812.1 + 48325 0.66 0.753159
Target:  5'- -cCGCGGCcgaGGCCGC-AACGgCGGCGg- -3'
miRNA:   3'- aaGUGCCG---CCGGUGcUUGU-GCCGCga -5'
21633 5' -60 NC_004812.1 + 145714 0.66 0.753159
Target:  5'- -aCAcCGGCGcugacggacGCC-CGAACGCGGCGa- -3'
miRNA:   3'- aaGU-GCCGC---------CGGuGCUUGUGCCGCga -5'
21633 5' -60 NC_004812.1 + 86445 0.66 0.753159
Target:  5'- gUUgGgGGCGGCCAgGAACGgcauguagguuCGGCGg- -3'
miRNA:   3'- -AAgUgCCGCCGGUgCUUGU-----------GCCGCga -5'
21633 5' -60 NC_004812.1 + 116792 0.66 0.753159
Target:  5'- -aCGCGGCcGCCAUGGucccCACGG-GCUc -3'
miRNA:   3'- aaGUGCCGcCGGUGCUu---GUGCCgCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.