miRNA display CGI


Results 1 - 20 of 717 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21633 5' -60 NC_004812.1 + 55647 0.66 0.704976
Target:  5'- cUCGCGGaCGuCCGCG---GCGGCGCg -3'
miRNA:   3'- aAGUGCC-GCcGGUGCuugUGCCGCGa -5'
21633 5' -60 NC_004812.1 + 46992 0.66 0.708899
Target:  5'- gUCAUGGCccGCCGgaccggcgacccgauCGAGCGCaGGCGCa -3'
miRNA:   3'- aAGUGCCGc-CGGU---------------GCUUGUG-CCGCGa -5'
21633 5' -60 NC_004812.1 + 76365 0.66 0.704976
Target:  5'- -cCGCGGCcGCCGCccccaGGGCGCcgaGGCGCg -3'
miRNA:   3'- aaGUGCCGcCGGUG-----CUUGUG---CCGCGa -5'
21633 5' -60 NC_004812.1 + 78041 0.66 0.704976
Target:  5'- --gGgGGUGGCC-CGcAgGCGGCGCUc -3'
miRNA:   3'- aagUgCCGCCGGuGCuUgUGCCGCGA- -5'
21633 5' -60 NC_004812.1 + 36521 0.66 0.714765
Target:  5'- gUCACGGCGgugcgcaccgccGCCGUGGcCACGGCGg- -3'
miRNA:   3'- aAGUGCCGC------------CGGUGCUuGUGCCGCga -5'
21633 5' -60 NC_004812.1 + 99800 0.66 0.714765
Target:  5'- --uGCGGCGcGCCGCcAGCugcgccgcgcgaACGGCGCc -3'
miRNA:   3'- aagUGCCGC-CGGUGcUUG------------UGCCGCGa -5'
21633 5' -60 NC_004812.1 + 100037 0.66 0.704976
Target:  5'- -gCAUGGCGGCCGCGcguccgaGCGGgGg- -3'
miRNA:   3'- aaGUGCCGCCGGUGCuug----UGCCgCga -5'
21633 5' -60 NC_004812.1 + 1673 0.66 0.714765
Target:  5'- -cCGCGGC-GCCGCGGcccgccCGCGGCGg- -3'
miRNA:   3'- aaGUGCCGcCGGUGCUu-----GUGCCGCga -5'
21633 5' -60 NC_004812.1 + 74763 0.66 0.704976
Target:  5'- cUCGCGcGCGGCCcCGAGgGCcuccGGCGaCUu -3'
miRNA:   3'- aAGUGC-CGCCGGuGCUUgUG----CCGC-GA- -5'
21633 5' -60 NC_004812.1 + 122876 0.66 0.714765
Target:  5'- -cCGCGuGCGGgggucguugaCCACGGGgAUGGUGCUg -3'
miRNA:   3'- aaGUGC-CGCC----------GGUGCUUgUGCCGCGA- -5'
21633 5' -60 NC_004812.1 + 127550 0.66 0.704976
Target:  5'- cUCGguCGGCGGCgGgGGGCGCgggggagggGGCGCg -3'
miRNA:   3'- aAGU--GCCGCCGgUgCUUGUG---------CCGCGa -5'
21633 5' -60 NC_004812.1 + 129774 0.66 0.718663
Target:  5'- -cCGCGGCGGCguucucgcgcgccagCAgGGGCGCGuacGCGCg -3'
miRNA:   3'- aaGUGCCGCCG---------------GUgCUUGUGC---CGCGa -5'
21633 5' -60 NC_004812.1 + 153357 0.66 0.753159
Target:  5'- --gGCGGCGGgggCGCGGGCGCcccuggcgGGCGCc -3'
miRNA:   3'- aagUGCCGCCg--GUGCUUGUG--------CCGCGa -5'
21633 5' -60 NC_004812.1 + 121666 0.66 0.704976
Target:  5'- --uGCGGCGGagGCgGAGCggcggGCGGCGCg -3'
miRNA:   3'- aagUGCCGCCggUG-CUUG-----UGCCGCGa -5'
21633 5' -60 NC_004812.1 + 110241 0.66 0.721578
Target:  5'- --gGCGGCGGCgaccucggagucccCGCGGuGCACGuGCGCc -3'
miRNA:   3'- aagUGCCGCCG--------------GUGCU-UGUGC-CGCGa -5'
21633 5' -60 NC_004812.1 + 71065 0.66 0.704976
Target:  5'- --uGCGGCGGUUcggGCG-GCGCGGgGCg -3'
miRNA:   3'- aagUGCCGCCGG---UGCuUGUGCCgCGa -5'
21633 5' -60 NC_004812.1 + 77576 0.66 0.704976
Target:  5'- -gCGCGGaGGCCACGugguACcgGCGGuCGCg -3'
miRNA:   3'- aaGUGCCgCCGGUGCu---UG--UGCC-GCGa -5'
21633 5' -60 NC_004812.1 + 100643 0.66 0.704976
Target:  5'- -gCACGGCGG-CGCGAGC-C-GCGCc -3'
miRNA:   3'- aaGUGCCGCCgGUGCUUGuGcCGCGa -5'
21633 5' -60 NC_004812.1 + 93230 0.66 0.704976
Target:  5'- ----aGGCGGCCcuggccgccaagACGAucUACGGCGCg -3'
miRNA:   3'- aagugCCGCCGG------------UGCUu-GUGCCGCGa -5'
21633 5' -60 NC_004812.1 + 75217 0.66 0.714765
Target:  5'- -gCAgGGCGGCCGUGAcgcggucggugGCcuCGGCGCg -3'
miRNA:   3'- aaGUgCCGCCGGUGCU-----------UGu-GCCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.