miRNA display CGI


Results 1 - 20 of 717 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21633 5' -60 NC_004812.1 + 57975 1.05 0.002122
Target:  5'- cUUCACGGCGGCCACGAACACGGCGCUg -3'
miRNA:   3'- -AAGUGCCGCCGGUGCUUGUGCCGCGA- -5'
21633 5' -60 NC_004812.1 + 152753 0.87 0.042886
Target:  5'- -cCGCGGCGGCCGCGGcgacCACGGCGCa -3'
miRNA:   3'- aaGUGCCGCCGGUGCUu---GUGCCGCGa -5'
21633 5' -60 NC_004812.1 + 121852 0.87 0.042886
Target:  5'- -cCGCGGCGGCCGCGGcgacCACGGCGCa -3'
miRNA:   3'- aaGUGCCGCCGGUGCUu---GUGCCGCGa -5'
21633 5' -60 NC_004812.1 + 30943 0.84 0.06731
Target:  5'- -gCGCGGCgGGCCGCGGGCGCGGCGg- -3'
miRNA:   3'- aaGUGCCG-CCGGUGCUUGUGCCGCga -5'
21633 5' -60 NC_004812.1 + 42 0.84 0.06731
Target:  5'- -gCGCGGCgGGCCGCGGGCGCGGCGg- -3'
miRNA:   3'- aaGUGCCG-CCGGUGCUUGUGCCGCga -5'
21633 5' -60 NC_004812.1 + 156452 0.84 0.06731
Target:  5'- -gCGCGGCgGGCCGCGGGCGCGGCGg- -3'
miRNA:   3'- aaGUGCCG-CCGGUGCUUGUGCCGCga -5'
21633 5' -60 NC_004812.1 + 98395 0.83 0.076756
Target:  5'- -gCGCGGCGGCCGCGGG-GCGGCGCc -3'
miRNA:   3'- aaGUGCCGCCGGUGCUUgUGCCGCGa -5'
21633 5' -60 NC_004812.1 + 107194 0.82 0.097039
Target:  5'- -aCGCGGCGGCC-CGGGgcCACGGCGCg -3'
miRNA:   3'- aaGUGCCGCCGGuGCUU--GUGCCGCGa -5'
21633 5' -60 NC_004812.1 + 80256 0.81 0.102191
Target:  5'- --gGCGGCGGCCGCGGACcuggcggugGCGGUGCg -3'
miRNA:   3'- aagUGCCGCCGGUGCUUG---------UGCCGCGa -5'
21633 5' -60 NC_004812.1 + 130432 0.81 0.104862
Target:  5'- cUCGCuGCGGcCCGCGGAgGCGGCGCUg -3'
miRNA:   3'- aAGUGcCGCC-GGUGCUUgUGCCGCGA- -5'
21633 5' -60 NC_004812.1 + 4924 0.81 0.104862
Target:  5'- cUCGCuGCGGcCCGCGGAgGCGGCGCUg -3'
miRNA:   3'- aAGUGcCGCC-GGUGCUUgUGCCGCGA- -5'
21633 5' -60 NC_004812.1 + 47743 0.81 0.107599
Target:  5'- gUCACGGCGGCgaACGAGgucagcgcCGCGGCGCUg -3'
miRNA:   3'- aAGUGCCGCCGg-UGCUU--------GUGCCGCGA- -5'
21633 5' -60 NC_004812.1 + 96633 0.81 0.113275
Target:  5'- -cCACGGCcGCCACGAGC-CGGCGCc -3'
miRNA:   3'- aaGUGCCGcCGGUGCUUGuGCCGCGa -5'
21633 5' -60 NC_004812.1 + 76117 0.8 0.128712
Target:  5'- --gGCGGCGGCCuCGAGCucguCGGCGCg -3'
miRNA:   3'- aagUGCCGCCGGuGCUUGu---GCCGCGa -5'
21633 5' -60 NC_004812.1 + 138261 0.8 0.132024
Target:  5'- -cCGCGGCGGCCGCGGucGCGCGccGCGCc -3'
miRNA:   3'- aaGUGCCGCCGGUGCU--UGUGC--CGCGa -5'
21633 5' -60 NC_004812.1 + 9369 0.79 0.135415
Target:  5'- -gCACGGCGGCCAUGAacuucguggccGCGCuGGCGCc -3'
miRNA:   3'- aaGUGCCGCCGGUGCU-----------UGUG-CCGCGa -5'
21633 5' -60 NC_004812.1 + 19891 0.78 0.15749
Target:  5'- -gCGCGGCGGCgGgGGACGCGGCGg- -3'
miRNA:   3'- aaGUGCCGCCGgUgCUUGUGCCGCga -5'
21633 5' -60 NC_004812.1 + 98767 0.78 0.15749
Target:  5'- -gCGCGGCGGCgGCGAgugggccgccgAgGCGGCGCUg -3'
miRNA:   3'- aaGUGCCGCCGgUGCU-----------UgUGCCGCGA- -5'
21633 5' -60 NC_004812.1 + 3490 0.78 0.161472
Target:  5'- -gCGCGGCgGGCCGCGGGCGCGG-GCc -3'
miRNA:   3'- aaGUGCCG-CCGGUGCUUGUGCCgCGa -5'
21633 5' -60 NC_004812.1 + 128998 0.78 0.161472
Target:  5'- -gCGCGGCgGGCCGCGGGCGCGG-GCc -3'
miRNA:   3'- aaGUGCCG-CCGGUGCUUGUGCCgCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.