miRNA display CGI


Results 21 - 40 of 717 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21633 5' -60 NC_004812.1 + 116792 0.66 0.753159
Target:  5'- -aCGCGGCcGCCAUGGucccCACGG-GCUc -3'
miRNA:   3'- aaGUGCCGcCGGUGCUu---GUGCCgCGA- -5'
21633 5' -60 NC_004812.1 + 71564 0.66 0.753159
Target:  5'- -gCAC-GCGGCCACGAggaaguucagcgACACGagccccGCGCg -3'
miRNA:   3'- aaGUGcCGCCGGUGCU------------UGUGC------CGCGa -5'
21633 5' -60 NC_004812.1 + 86811 0.66 0.753159
Target:  5'- --gAgGGCGGCgGCGA-CGCGGUGg- -3'
miRNA:   3'- aagUgCCGCCGgUGCUuGUGCCGCga -5'
21633 5' -60 NC_004812.1 + 84216 0.66 0.752217
Target:  5'- cUCACGuggauccGCGGCCugGAGgAgcUGGCGUc -3'
miRNA:   3'- aAGUGC-------CGCCGGugCUUgU--GCCGCGa -5'
21633 5' -60 NC_004812.1 + 114961 0.66 0.743693
Target:  5'- -cCGCGGCguuGGCgACGucgGCcuCGGCGCUg -3'
miRNA:   3'- aaGUGCCG---CCGgUGCu--UGu-GCCGCGA- -5'
21633 5' -60 NC_004812.1 + 130494 0.66 0.743693
Target:  5'- ---uCGGCGGUCGCGAuCcCGGaCGCg -3'
miRNA:   3'- aaguGCCGCCGGUGCUuGuGCC-GCGa -5'
21633 5' -60 NC_004812.1 + 141585 0.66 0.743693
Target:  5'- --aGCGGCGGCguUGAGCA--GCGCg -3'
miRNA:   3'- aagUGCCGCCGguGCUUGUgcCGCGa -5'
21633 5' -60 NC_004812.1 + 88204 0.66 0.743693
Target:  5'- -gCGgGGCGaGCCGCGGccccGgACGGCgGCUg -3'
miRNA:   3'- aaGUgCCGC-CGGUGCU----UgUGCCG-CGA- -5'
21633 5' -60 NC_004812.1 + 54762 0.66 0.743693
Target:  5'- --gGCGGUGGaCACG---GCGGCGCUc -3'
miRNA:   3'- aagUGCCGCCgGUGCuugUGCCGCGA- -5'
21633 5' -60 NC_004812.1 + 57989 0.66 0.743693
Target:  5'- -gCGCGGCcgcgacGGCCGCGAcggcCACGGgaGCg -3'
miRNA:   3'- aaGUGCCG------CCGGUGCUu---GUGCCg-CGa -5'
21633 5' -60 NC_004812.1 + 137981 0.66 0.743693
Target:  5'- --gGgGGCGGCCGCGucUggGGCGUg -3'
miRNA:   3'- aagUgCCGCCGGUGCuuGugCCGCGa -5'
21633 5' -60 NC_004812.1 + 147230 0.66 0.743693
Target:  5'- -gCGCcagcGCGGCCACGAAguuCAUGGcCGCc -3'
miRNA:   3'- aaGUGc---CGCCGGUGCUU---GUGCC-GCGa -5'
21633 5' -60 NC_004812.1 + 68217 0.66 0.743693
Target:  5'- -gCGCGGcCGGCCGgGGguGCGCGGgGg- -3'
miRNA:   3'- aaGUGCC-GCCGGUgCU--UGUGCCgCga -5'
21633 5' -60 NC_004812.1 + 41202 0.66 0.743693
Target:  5'- ---uCGGCGcGCCGCGcGGgGCGGCGaCUa -3'
miRNA:   3'- aaguGCCGC-CGGUGC-UUgUGCCGC-GA- -5'
21633 5' -60 NC_004812.1 + 121804 0.66 0.743693
Target:  5'- cUCGCguggcgggGGCGGCCucggagGCGGAgGCcgGGCGCUu -3'
miRNA:   3'- aAGUG--------CCGCCGG------UGCUUgUG--CCGCGA- -5'
21633 5' -60 NC_004812.1 + 79531 0.66 0.743693
Target:  5'- -gCGCaGCGGaugcgaaACGAcgACGCGGCGCUc -3'
miRNA:   3'- aaGUGcCGCCgg-----UGCU--UGUGCCGCGA- -5'
21633 5' -60 NC_004812.1 + 145312 0.66 0.743693
Target:  5'- -cCGCGGC-GCCcC--GCGCGGCGCg -3'
miRNA:   3'- aaGUGCCGcCGGuGcuUGUGCCGCGa -5'
21633 5' -60 NC_004812.1 + 86919 0.66 0.743693
Target:  5'- cUUCuguCGGUGcGcCCGCGAAaaagaggaGCGGCGCg -3'
miRNA:   3'- -AAGu--GCCGC-C-GGUGCUUg-------UGCCGCGa -5'
21633 5' -60 NC_004812.1 + 76834 0.66 0.743693
Target:  5'- cUC-CGGgGGCgCGCcuGCGCGGCGUc -3'
miRNA:   3'- aAGuGCCgCCG-GUGcuUGUGCCGCGa -5'
21633 5' -60 NC_004812.1 + 51222 0.66 0.743693
Target:  5'- -gCAcCGGC-GCCAgCGAGaccauCGCGGCGCUg -3'
miRNA:   3'- aaGU-GCCGcCGGU-GCUU-----GUGCCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.