miRNA display CGI


Results 1 - 20 of 620 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21636 3' -63 NC_004812.1 + 39270 0.66 0.617671
Target:  5'- aGCGCUgcaugGGCagcaGCAGCGCCaggGGC-GGGGCu -3'
miRNA:   3'- gCGCGG-----CCG----CGUCGUGG---CCGaCCUUG- -5'
21636 3' -63 NC_004812.1 + 148408 0.66 0.617671
Target:  5'- uCGUGuCUGGCGC-GUGCCuGCgGGGGCg -3'
miRNA:   3'- -GCGC-GGCCGCGuCGUGGcCGaCCUUG- -5'
21636 3' -63 NC_004812.1 + 37130 0.66 0.617671
Target:  5'- cCGCGUCGGCcgccGCGGCGCagaggagGGCcgUGGuGCg -3'
miRNA:   3'- -GCGCGGCCG----CGUCGUGg------CCG--ACCuUG- -5'
21636 3' -63 NC_004812.1 + 112873 0.66 0.617671
Target:  5'- gGCGCCGccgcgagggacGgGCGGCGagacgaCGGCgacGGAGCg -3'
miRNA:   3'- gCGCGGC-----------CgCGUCGUg-----GCCGa--CCUUG- -5'
21636 3' -63 NC_004812.1 + 22900 0.66 0.617671
Target:  5'- uCGUGuCUGGCGC-GUGCCuGCgGGGGCg -3'
miRNA:   3'- -GCGC-GGCCGCGuCGUGGcCGaCCUUG- -5'
21636 3' -63 NC_004812.1 + 82091 0.66 0.617671
Target:  5'- gGCGCgUGGCcCGGCugGCCGGC-GGAcaGCa -3'
miRNA:   3'- gCGCG-GCCGcGUCG--UGGCCGaCCU--UG- -5'
21636 3' -63 NC_004812.1 + 109708 0.66 0.617671
Target:  5'- gGCGgCGGcCGCcGCGCCcgaccccgggGcGCUGGGGCu -3'
miRNA:   3'- gCGCgGCC-GCGuCGUGG----------C-CGACCUUG- -5'
21636 3' -63 NC_004812.1 + 79154 0.66 0.617671
Target:  5'- gCGCGCUuggGGUGguGUcgGCCGGC-GGAc- -3'
miRNA:   3'- -GCGCGG---CCGCguCG--UGGCCGaCCUug -5'
21636 3' -63 NC_004812.1 + 17642 0.66 0.617671
Target:  5'- gGUGCCGGgGCuucGGuCGCCGGC-GGcuCg -3'
miRNA:   3'- gCGCGGCCgCG---UC-GUGGCCGaCCuuG- -5'
21636 3' -63 NC_004812.1 + 141387 0.66 0.617671
Target:  5'- cCGuCGCC-GUGUAcuaCGCCGuGCUGGAGCg -3'
miRNA:   3'- -GC-GCGGcCGCGUc--GUGGC-CGACCUUG- -5'
21636 3' -63 NC_004812.1 + 73649 0.66 0.617671
Target:  5'- aGCGUgaGGUGCAuGUACuCGuGCUGGAGg -3'
miRNA:   3'- gCGCGg-CCGCGU-CGUG-GC-CGACCUUg -5'
21636 3' -63 NC_004812.1 + 66543 0.66 0.617671
Target:  5'- uCGCGCUcgcaGGCGCugGGCuccagUCGGCggaGGGACg -3'
miRNA:   3'- -GCGCGG----CCGCG--UCGu----GGCCGa--CCUUG- -5'
21636 3' -63 NC_004812.1 + 151709 0.66 0.617671
Target:  5'- aGCGgCGGCGCGcgcGCGCCgccguGGCcgGGcGCg -3'
miRNA:   3'- gCGCgGCCGCGU---CGUGG-----CCGa-CCuUG- -5'
21636 3' -63 NC_004812.1 + 100453 0.66 0.617671
Target:  5'- uGCGagGGCGUGGUGCgGGCguagaGGGGCg -3'
miRNA:   3'- gCGCggCCGCGUCGUGgCCGa----CCUUG- -5'
21636 3' -63 NC_004812.1 + 116471 0.66 0.617671
Target:  5'- gGCGCCGGCcacccCGGCcccuCCGGa-GGGGCc -3'
miRNA:   3'- gCGCGGCCGc----GUCGu---GGCCgaCCUUG- -5'
21636 3' -63 NC_004812.1 + 2622 0.66 0.617671
Target:  5'- cCGCGCCGGCcccgccccGCGagaccuGCGCCGucuGCacGGAGCg -3'
miRNA:   3'- -GCGCGGCCG--------CGU------CGUGGC---CGa-CCUUG- -5'
21636 3' -63 NC_004812.1 + 147404 0.66 0.617671
Target:  5'- -uCGCCaGGUGaCGcCACCGGCggGGAGCu -3'
miRNA:   3'- gcGCGG-CCGC-GUcGUGGCCGa-CCUUG- -5'
21636 3' -63 NC_004812.1 + 26201 0.66 0.617671
Target:  5'- aGCGgCGGCGCGcgcGCGCCgccguGGCcgGGcGCg -3'
miRNA:   3'- gCGCgGCCGCGU---CGUGG-----CCGa-CCuUG- -5'
21636 3' -63 NC_004812.1 + 67416 0.66 0.617671
Target:  5'- gGCcCCGGCucccagacggcgGgGGUGCCGGCgaGGAGCa -3'
miRNA:   3'- gCGcGGCCG------------CgUCGUGGCCGa-CCUUG- -5'
21636 3' -63 NC_004812.1 + 124346 0.66 0.617671
Target:  5'- uCGCGCaCGGCGUuugcauagccGGCcuuCCGGC-GGAc- -3'
miRNA:   3'- -GCGCG-GCCGCG----------UCGu--GGCCGaCCUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.