miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21636 5' -59.6 NC_004812.1 + 112461 0.66 0.756779
Target:  5'- ----aGCGCCCUcCGGCCGuCcGGCg -3'
miRNA:   3'- uucaaCGCGGGGaGCUGGCuGaCCGa -5'
21636 5' -59.6 NC_004812.1 + 87173 0.66 0.756779
Target:  5'- gAGGaUGCGCCgCgugCGGCCGGCguccuccgGGCc -3'
miRNA:   3'- -UUCaACGCGGgGa--GCUGGCUGa-------CCGa -5'
21636 5' -59.6 NC_004812.1 + 141810 0.66 0.756779
Target:  5'- cGGggGUGCCgCUCGGCCa--UGGCg -3'
miRNA:   3'- uUCaaCGCGGgGAGCUGGcugACCGa -5'
21636 5' -59.6 NC_004812.1 + 121459 0.66 0.756779
Target:  5'- ----aGgGCCCCUCGACgGACgUGcGCc -3'
miRNA:   3'- uucaaCgCGGGGAGCUGgCUG-AC-CGa -5'
21636 5' -59.6 NC_004812.1 + 52212 0.66 0.756779
Target:  5'- ---gUGCGCUCCaUGGCCGACaccagGGCc -3'
miRNA:   3'- uucaACGCGGGGaGCUGGCUGa----CCGa -5'
21636 5' -59.6 NC_004812.1 + 51554 0.66 0.756779
Target:  5'- cAGUgUGCGCCCg-CGGCCGGagcGGCg -3'
miRNA:   3'- uUCA-ACGCGGGgaGCUGGCUga-CCGa -5'
21636 5' -59.6 NC_004812.1 + 77242 0.66 0.755835
Target:  5'- gGGGUgugggGCGCugCCCUCGcgggggcGCCG-CUGGCg -3'
miRNA:   3'- -UUCAa----CGCG--GGGAGC-------UGGCuGACCGa -5'
21636 5' -59.6 NC_004812.1 + 141192 0.66 0.747291
Target:  5'- cGGUUGCGCucgCCCgCGuuCCGGCgGGCg -3'
miRNA:   3'- uUCAACGCG---GGGaGCu-GGCUGaCCGa -5'
21636 5' -59.6 NC_004812.1 + 4694 0.66 0.747291
Target:  5'- aGGGgaGCGCCCC-CGGCCcgccgcgcgagGACggGGCg -3'
miRNA:   3'- -UUCaaCGCGGGGaGCUGG-----------CUGa-CCGa -5'
21636 5' -59.6 NC_004812.1 + 65502 0.66 0.747291
Target:  5'- ----aGCGaCCCCaCGGCCGGCaGGCc -3'
miRNA:   3'- uucaaCGC-GGGGaGCUGGCUGaCCGa -5'
21636 5' -59.6 NC_004812.1 + 35595 0.66 0.747291
Target:  5'- aGGGgaGCGCCCC-CGGCCcgccgcgcgagGACggGGCg -3'
miRNA:   3'- -UUCaaCGCGGGGaGCUGG-----------CUGa-CCGa -5'
21636 5' -59.6 NC_004812.1 + 58037 0.66 0.747291
Target:  5'- ----cGCGCCCCUCGugCug--GGCg -3'
miRNA:   3'- uucaaCGCGGGGAGCugGcugaCCGa -5'
21636 5' -59.6 NC_004812.1 + 21619 0.66 0.747291
Target:  5'- cGAGUcggcccgGCGgCgCUCGGCCGAgCUGGUg -3'
miRNA:   3'- -UUCAa------CGCgGgGAGCUGGCU-GACCGa -5'
21636 5' -59.6 NC_004812.1 + 79673 0.66 0.737705
Target:  5'- gGGGUgcUGCGCCCgCUCc-CCGACUucggggGGCUg -3'
miRNA:   3'- -UUCA--ACGCGGG-GAGcuGGCUGA------CCGA- -5'
21636 5' -59.6 NC_004812.1 + 105738 0.66 0.737705
Target:  5'- cGGGggGUGgCCCgCGACCaGCUGGUUa -3'
miRNA:   3'- -UUCaaCGCgGGGaGCUGGcUGACCGA- -5'
21636 5' -59.6 NC_004812.1 + 75249 0.66 0.737705
Target:  5'- ----cGCGCCCUcaCGGCCGccCUGGCg -3'
miRNA:   3'- uucaaCGCGGGGa-GCUGGCu-GACCGa -5'
21636 5' -59.6 NC_004812.1 + 45279 0.66 0.737705
Target:  5'- gGGGUcgGCGCCgCCgCGGgCaGACUGGCg -3'
miRNA:   3'- -UUCAa-CGCGG-GGaGCUgG-CUGACCGa -5'
21636 5' -59.6 NC_004812.1 + 136520 0.66 0.728029
Target:  5'- -cGgcGCGCUCCUCcgaggcguccGCUGGCUGGCg -3'
miRNA:   3'- uuCaaCGCGGGGAGc---------UGGCUGACCGa -5'
21636 5' -59.6 NC_004812.1 + 65097 0.66 0.728029
Target:  5'- ----cGCGCCCCgcggagGAgUGGCUGGCg -3'
miRNA:   3'- uucaaCGCGGGGag----CUgGCUGACCGa -5'
21636 5' -59.6 NC_004812.1 + 138352 0.66 0.728029
Target:  5'- ----cGCGCacgacgCCUgCGACCGGCUGGUc -3'
miRNA:   3'- uucaaCGCGg-----GGA-GCUGGCUGACCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.