miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21637 3' -57.3 NC_004812.1 + 137709 0.66 0.819465
Target:  5'- -aGCagGCCCAGGUGCAGu--GGa--- -3'
miRNA:   3'- uaCGg-CGGGUCCACGUCuuuCCacaa -5'
21637 3' -57.3 NC_004812.1 + 10100 0.67 0.773624
Target:  5'- -gGUCGCUguGGgGguGAGAGGUGa- -3'
miRNA:   3'- uaCGGCGGguCCaCguCUUUCCACaa -5'
21637 3' -57.3 NC_004812.1 + 139599 0.67 0.773624
Target:  5'- -aGCCGUCCAGGacgaagUGCAGcc-GGUGg- -3'
miRNA:   3'- uaCGGCGGGUCC------ACGUCuuuCCACaa -5'
21637 3' -57.3 NC_004812.1 + 56599 0.67 0.773624
Target:  5'- -cGCCGCgCGGGggGguGAuGAGGUGg- -3'
miRNA:   3'- uaCGGCGgGUCCa-CguCU-UUCCACaa -5'
21637 3' -57.3 NC_004812.1 + 104758 0.67 0.764024
Target:  5'- -cGCCGCCCGGccUGUGGGuccGGGUGUc -3'
miRNA:   3'- uaCGGCGGGUCc-ACGUCUu--UCCACAa -5'
21637 3' -57.3 NC_004812.1 + 85488 0.67 0.751364
Target:  5'- cUGCCGCCgCGGGgGCuGGAgucggcccuggagcGGGUGUUu -3'
miRNA:   3'- uACGGCGG-GUCCaCGuCUU--------------UCCACAA- -5'
21637 3' -57.3 NC_004812.1 + 96153 0.67 0.74447
Target:  5'- -cGCCGCCUuccgcugguucgAGGgcgGCGGcGAGGUGg- -3'
miRNA:   3'- uaCGGCGGG------------UCCa--CGUCuUUCCACaa -5'
21637 3' -57.3 NC_004812.1 + 98785 0.67 0.74447
Target:  5'- -gGCCGCCgAGGcgGCGcuGAGGUGg- -3'
miRNA:   3'- uaCGGCGGgUCCa-CGUcuUUCCACaa -5'
21637 3' -57.3 NC_004812.1 + 26276 0.67 0.743481
Target:  5'- -gGCCGCgCGGGUGCcccgcggcgacagGGGAAGGUc-- -3'
miRNA:   3'- uaCGGCGgGUCCACG-------------UCUUUCCAcaa -5'
21637 3' -57.3 NC_004812.1 + 148562 0.67 0.734535
Target:  5'- -gGCCGgCCGGGcGCcGggGGGUGc- -3'
miRNA:   3'- uaCGGCgGGUCCaCGuCuuUCCACaa -5'
21637 3' -57.3 NC_004812.1 + 117661 0.67 0.734535
Target:  5'- -gGCCGgCCGGGcGCcGggGGGUGc- -3'
miRNA:   3'- uaCGGCgGGUCCaCGuCuuUCCACaa -5'
21637 3' -57.3 NC_004812.1 + 5339 0.67 0.724506
Target:  5'- -cGCCGCCCGGGgucgGCGGggGcgcGGcGg- -3'
miRNA:   3'- uaCGGCGGGUCCa---CGUCuuU---CCaCaa -5'
21637 3' -57.3 NC_004812.1 + 130847 0.67 0.724506
Target:  5'- -cGCCGCCCGGGgucgGCGGggGcgcGGcGg- -3'
miRNA:   3'- uaCGGCGGGUCCa---CGUCuuU---CCaCaa -5'
21637 3' -57.3 NC_004812.1 + 26407 0.68 0.662944
Target:  5'- -aGCCGCCCGGGgcucugggGCGcgccGGAGGUGg- -3'
miRNA:   3'- uaCGGCGGGUCCa-------CGUc---UUUCCACaa -5'
21637 3' -57.3 NC_004812.1 + 151915 0.68 0.662944
Target:  5'- -aGCCGCCCGGGgcucugggGCGcgccGGAGGUGg- -3'
miRNA:   3'- uaCGGCGGGUCCa-------CGUc---UUUCCACaa -5'
21637 3' -57.3 NC_004812.1 + 155378 0.69 0.642117
Target:  5'- -cGCCGCCC-GG-GCGGGGAGGa--- -3'
miRNA:   3'- uaCGGCGGGuCCaCGUCUUUCCacaa -5'
21637 3' -57.3 NC_004812.1 + 124477 0.69 0.642117
Target:  5'- -cGCCGCCC-GG-GCGGGGAGGa--- -3'
miRNA:   3'- uaCGGCGGGuCCaCGUCUUUCCacaa -5'
21637 3' -57.3 NC_004812.1 + 22953 0.7 0.559131
Target:  5'- -cGCCGCUCGGG-GC-GAGGGGUGc- -3'
miRNA:   3'- uaCGGCGGGUCCaCGuCUUUCCACaa -5'
21637 3' -57.3 NC_004812.1 + 155953 0.73 0.414489
Target:  5'- -cGCCGCCCGGGcGCGGcguuGGUGg- -3'
miRNA:   3'- uaCGGCGGGUCCaCGUCuuu-CCACaa -5'
21637 3' -57.3 NC_004812.1 + 125052 0.73 0.414489
Target:  5'- -cGCCGCCCGGGcGCGGcguuGGUGg- -3'
miRNA:   3'- uaCGGCGGGUCCaCGUCuuu-CCACaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.