miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21637 5' -57.1 NC_004812.1 + 120586 0.66 0.862794
Target:  5'- --cCCGCCUCCgcgcccGCCCCcCGGa- -3'
miRNA:   3'- uauGGCGGAGGaacu--UGGGGaGCCau -5'
21637 5' -57.1 NC_004812.1 + 151487 0.66 0.862794
Target:  5'- --cCCGCCUCCgcgcccGCCCCcCGGa- -3'
miRNA:   3'- uauGGCGGAGGaacu--UGGGGaGCCau -5'
21637 5' -57.1 NC_004812.1 + 14623 0.66 0.855068
Target:  5'- -gGCCGUCUCC----ACCaCCUCGGg- -3'
miRNA:   3'- uaUGGCGGAGGaacuUGG-GGAGCCau -5'
21637 5' -57.1 NC_004812.1 + 133041 0.66 0.839009
Target:  5'- -cGCCGCC-CCUcccGCCCaCUCGGg- -3'
miRNA:   3'- uaUGGCGGaGGAacuUGGG-GAGCCau -5'
21637 5' -57.1 NC_004812.1 + 7533 0.66 0.839009
Target:  5'- -cGCCGCC-CCUcccGCCCaCUCGGg- -3'
miRNA:   3'- uaUGGCGGaGGAacuUGGG-GAGCCau -5'
21637 5' -57.1 NC_004812.1 + 55709 0.66 0.839009
Target:  5'- -gGCCGUCUCCgc--GCCCCgccUCGGg- -3'
miRNA:   3'- uaUGGCGGAGGaacuUGGGG---AGCCau -5'
21637 5' -57.1 NC_004812.1 + 21956 0.66 0.830691
Target:  5'- -gAgCGCCUCCUgcaGGACCUC-CGGg- -3'
miRNA:   3'- uaUgGCGGAGGAa--CUUGGGGaGCCau -5'
21637 5' -57.1 NC_004812.1 + 150285 0.66 0.830691
Target:  5'- cUGCC-CCUCCUgcccgGGGCCCCcCGcGUGc -3'
miRNA:   3'- uAUGGcGGAGGAa----CUUGGGGaGC-CAU- -5'
21637 5' -57.1 NC_004812.1 + 119384 0.66 0.830691
Target:  5'- cUGCC-CCUCCUgcccgGGGCCCCcCGcGUGc -3'
miRNA:   3'- uAUGGcGGAGGAa----CUUGGGGaGC-CAU- -5'
21637 5' -57.1 NC_004812.1 + 111638 0.66 0.82219
Target:  5'- -gGCCgcggGCCUCCUgcgcgcCCCCUCGGc- -3'
miRNA:   3'- uaUGG----CGGAGGAacuu--GGGGAGCCau -5'
21637 5' -57.1 NC_004812.1 + 17271 0.67 0.804674
Target:  5'- -gACCGCCUCCgccuucgUGAAaaUCUCGGc- -3'
miRNA:   3'- uaUGGCGGAGGa------ACUUggGGAGCCau -5'
21637 5' -57.1 NC_004812.1 + 107462 0.67 0.804674
Target:  5'- -cGCCGCCgaUCCccaGGGCCCgCUCGGc- -3'
miRNA:   3'- uaUGGCGG--AGGaa-CUUGGG-GAGCCau -5'
21637 5' -57.1 NC_004812.1 + 156371 0.67 0.804674
Target:  5'- --cCCGCgCgggagCCUUGGGCCCCgCGGg- -3'
miRNA:   3'- uauGGCG-Ga----GGAACUUGGGGaGCCau -5'
21637 5' -57.1 NC_004812.1 + 125470 0.67 0.804674
Target:  5'- --cCCGCgCgggagCCUUGGGCCCCgCGGg- -3'
miRNA:   3'- uauGGCG-Ga----GGAACUUGGGGaGCCau -5'
21637 5' -57.1 NC_004812.1 + 48098 0.67 0.786525
Target:  5'- -gGCCGCCgCCgUGcGCCCCgugCGGg- -3'
miRNA:   3'- uaUGGCGGaGGaACuUGGGGa--GCCau -5'
21637 5' -57.1 NC_004812.1 + 54329 0.67 0.786525
Target:  5'- uGUACgGggcgauguUCUCCUUGAAgaucaccgcgauCCCCUCGGUGu -3'
miRNA:   3'- -UAUGgC--------GGAGGAACUU------------GGGGAGCCAU- -5'
21637 5' -57.1 NC_004812.1 + 110835 0.67 0.771599
Target:  5'- -cACCGUCUCCcgagGAGacgcccucgccgucuCCCCUCGGg- -3'
miRNA:   3'- uaUGGCGGAGGaa--CUU---------------GGGGAGCCau -5'
21637 5' -57.1 NC_004812.1 + 4569 0.67 0.767816
Target:  5'- ---gCGCCacCCUUGGACCCC-CGGg- -3'
miRNA:   3'- uaugGCGGa-GGAACUUGGGGaGCCau -5'
21637 5' -57.1 NC_004812.1 + 35470 0.67 0.767816
Target:  5'- ---gCGCCacCCUUGGACCCC-CGGg- -3'
miRNA:   3'- uaugGCGGa-GGAACUUGGGGaGCCau -5'
21637 5' -57.1 NC_004812.1 + 88853 0.68 0.748618
Target:  5'- -cGCCGCCUCCcccgGGACCgCgaaGGUGc -3'
miRNA:   3'- uaUGGCGGAGGaa--CUUGGgGag-CCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.