Results 21 - 40 of 41 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21637 | 5' | -57.1 | NC_004812.1 | + | 79147 | 0.68 | 0.738859 |
Target: 5'- --cCCGCCUCCgcucgccacGAGCCCCcCGGc- -3' miRNA: 3'- uauGGCGGAGGaa-------CUUGGGGaGCCau -5' |
|||||||
21637 | 5' | -57.1 | NC_004812.1 | + | 43468 | 0.68 | 0.723054 |
Target: 5'- -cACCGCCcCCacGAGCCCCaggucgcggcgcgucUCGGUGc -3' miRNA: 3'- uaUGGCGGaGGaaCUUGGGG---------------AGCCAU- -5' |
|||||||
21637 | 5' | -57.1 | NC_004812.1 | + | 56333 | 0.68 | 0.719069 |
Target: 5'- -cGCCGCCUCCgaGAACCCggaGGc- -3' miRNA: 3'- uaUGGCGGAGGaaCUUGGGgagCCau -5' |
|||||||
21637 | 5' | -57.1 | NC_004812.1 | + | 52340 | 0.68 | 0.719069 |
Target: 5'- --cCCGUCgcUCUUGAGCUCCUUGGUGg -3' miRNA: 3'- uauGGCGGa-GGAACUUGGGGAGCCAU- -5' |
|||||||
21637 | 5' | -57.1 | NC_004812.1 | + | 20641 | 0.69 | 0.698979 |
Target: 5'- -cACCGCCUCCUccGAGagcaggcuCCCgUCGGUc -3' miRNA: 3'- uaUGGCGGAGGAa-CUU--------GGGgAGCCAu -5' |
|||||||
21637 | 5' | -57.1 | NC_004812.1 | + | 77750 | 0.69 | 0.688843 |
Target: 5'- -gGCgGCCUCCgcccuccccGGGCUCCUCGGg- -3' miRNA: 3'- uaUGgCGGAGGaa-------CUUGGGGAGCCau -5' |
|||||||
21637 | 5' | -57.1 | NC_004812.1 | + | 121442 | 0.69 | 0.668439 |
Target: 5'- gGUGCCGCCcgugUUCgaGGGCCCCUCGa-- -3' miRNA: 3'- -UAUGGCGG----AGGaaCUUGGGGAGCcau -5' |
|||||||
21637 | 5' | -57.1 | NC_004812.1 | + | 120099 | 0.7 | 0.647916 |
Target: 5'- -aGCCGCCUCCggc--CCCCUgGGg- -3' miRNA: 3'- uaUGGCGGAGGaacuuGGGGAgCCau -5' |
|||||||
21637 | 5' | -57.1 | NC_004812.1 | + | 151000 | 0.7 | 0.647916 |
Target: 5'- -aGCCGCCUCCggc--CCCCUgGGg- -3' miRNA: 3'- uaUGGCGGAGGaacuuGGGGAgCCau -5' |
|||||||
21637 | 5' | -57.1 | NC_004812.1 | + | 84583 | 0.7 | 0.637631 |
Target: 5'- -cACCGCCUCCUgcGACCCaC-CGGg- -3' miRNA: 3'- uaUGGCGGAGGAacUUGGG-GaGCCau -5' |
|||||||
21637 | 5' | -57.1 | NC_004812.1 | + | 154459 | 0.7 | 0.637631 |
Target: 5'- -gGCCGCCgCCgcGAGCCCCgcccgCGGg- -3' miRNA: 3'- uaUGGCGGaGGaaCUUGGGGa----GCCau -5' |
|||||||
21637 | 5' | -57.1 | NC_004812.1 | + | 28950 | 0.7 | 0.637631 |
Target: 5'- -gGCCGCCgCCgcGAGCCCCgcccgCGGg- -3' miRNA: 3'- uaUGGCGGaGGaaCUUGGGGa----GCCau -5' |
|||||||
21637 | 5' | -57.1 | NC_004812.1 | + | 20243 | 0.7 | 0.637631 |
Target: 5'- -gGCCGCCgggaCCUUGggUCCCgccguguuuuUCGGUc -3' miRNA: 3'- uaUGGCGGa---GGAACuuGGGG----------AGCCAu -5' |
|||||||
21637 | 5' | -57.1 | NC_004812.1 | + | 155325 | 0.7 | 0.617056 |
Target: 5'- --cCCGCCUCCggGGACCCUggGGg- -3' miRNA: 3'- uauGGCGGAGGaaCUUGGGGagCCau -5' |
|||||||
21637 | 5' | -57.1 | NC_004812.1 | + | 29817 | 0.7 | 0.617056 |
Target: 5'- --cCCGCCUCCggGGACCCUggGGg- -3' miRNA: 3'- uauGGCGGAGGaaCUUGGGGagCCau -5' |
|||||||
21637 | 5' | -57.1 | NC_004812.1 | + | 19340 | 0.71 | 0.586299 |
Target: 5'- -cAgCGCCggggCCgaGAACCCCUCGGc- -3' miRNA: 3'- uaUgGCGGa---GGaaCUUGGGGAGCCau -5' |
|||||||
21637 | 5' | -57.1 | NC_004812.1 | + | 103175 | 0.71 | 0.565949 |
Target: 5'- -gGCCGCCgucagcgcggCCccGGGCUCCUCGGUGg -3' miRNA: 3'- uaUGGCGGa---------GGaaCUUGGGGAGCCAU- -5' |
|||||||
21637 | 5' | -57.1 | NC_004812.1 | + | 46435 | 0.71 | 0.555841 |
Target: 5'- -cGCCGCCUCCUcgucGAcACCCCcgCGGg- -3' miRNA: 3'- uaUGGCGGAGGAa---CU-UGGGGa-GCCau -5' |
|||||||
21637 | 5' | -57.1 | NC_004812.1 | + | 54305 | 0.72 | 0.52586 |
Target: 5'- -aGCCGCCggaUCCUUGAucgcugccGCCCCUCGc-- -3' miRNA: 3'- uaUGGCGG---AGGAACU--------UGGGGAGCcau -5' |
|||||||
21637 | 5' | -57.1 | NC_004812.1 | + | 42448 | 0.72 | 0.496509 |
Target: 5'- aGUACCGCCUaCCgacGAGCCCUUCGuGg- -3' miRNA: 3'- -UAUGGCGGA-GGaa-CUUGGGGAGC-Cau -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home