miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21637 5' -57.1 NC_004812.1 + 55709 0.66 0.839009
Target:  5'- -gGCCGUCUCCgc--GCCCCgccUCGGg- -3'
miRNA:   3'- uaUGGCGGAGGaacuUGGGG---AGCCau -5'
21637 5' -57.1 NC_004812.1 + 43468 0.68 0.723054
Target:  5'- -cACCGCCcCCacGAGCCCCaggucgcggcgcgucUCGGUGc -3'
miRNA:   3'- uaUGGCGGaGGaaCUUGGGG---------------AGCCAU- -5'
21637 5' -57.1 NC_004812.1 + 4569 0.67 0.767816
Target:  5'- ---gCGCCacCCUUGGACCCC-CGGg- -3'
miRNA:   3'- uaugGCGGa-GGAACUUGGGGaGCCau -5'
21637 5' -57.1 NC_004812.1 + 54329 0.67 0.786525
Target:  5'- uGUACgGggcgauguUCUCCUUGAAgaucaccgcgauCCCCUCGGUGu -3'
miRNA:   3'- -UAUGgC--------GGAGGAACUU------------GGGGAGCCAU- -5'
21637 5' -57.1 NC_004812.1 + 17271 0.67 0.804674
Target:  5'- -gACCGCCUCCgccuucgUGAAaaUCUCGGc- -3'
miRNA:   3'- uaUGGCGGAGGa------ACUUggGGAGCCau -5'
21637 5' -57.1 NC_004812.1 + 125470 0.67 0.804674
Target:  5'- --cCCGCgCgggagCCUUGGGCCCCgCGGg- -3'
miRNA:   3'- uauGGCG-Ga----GGAACUUGGGGaGCCau -5'
21637 5' -57.1 NC_004812.1 + 107462 0.67 0.804674
Target:  5'- -cGCCGCCgaUCCccaGGGCCCgCUCGGc- -3'
miRNA:   3'- uaUGGCGG--AGGaa-CUUGGG-GAGCCau -5'
21637 5' -57.1 NC_004812.1 + 119384 0.66 0.830691
Target:  5'- cUGCC-CCUCCUgcccgGGGCCCCcCGcGUGc -3'
miRNA:   3'- uAUGGcGGAGGAa----CUUGGGGaGC-CAU- -5'
21637 5' -57.1 NC_004812.1 + 21956 0.66 0.830691
Target:  5'- -gAgCGCCUCCUgcaGGACCUC-CGGg- -3'
miRNA:   3'- uaUgGCGGAGGAa--CUUGGGGaGCCau -5'
21637 5' -57.1 NC_004812.1 + 56333 0.68 0.719069
Target:  5'- -cGCCGCCUCCgaGAACCCggaGGc- -3'
miRNA:   3'- uaUGGCGGAGGaaCUUGGGgagCCau -5'
21637 5' -57.1 NC_004812.1 + 52340 0.68 0.719069
Target:  5'- --cCCGUCgcUCUUGAGCUCCUUGGUGg -3'
miRNA:   3'- uauGGCGGa-GGAACUUGGGGAGCCAU- -5'
21637 5' -57.1 NC_004812.1 + 20641 0.69 0.698979
Target:  5'- -cACCGCCUCCUccGAGagcaggcuCCCgUCGGUc -3'
miRNA:   3'- uaUGGCGGAGGAa-CUU--------GGGgAGCCAu -5'
21637 5' -57.1 NC_004812.1 + 42448 0.72 0.496509
Target:  5'- aGUACCGCCUaCCgacGAGCCCUUCGuGg- -3'
miRNA:   3'- -UAUGGCGGA-GGaa-CUUGGGGAGC-Cau -5'
21637 5' -57.1 NC_004812.1 + 103175 0.71 0.565949
Target:  5'- -gGCCGCCgucagcgcggCCccGGGCUCCUCGGUGg -3'
miRNA:   3'- uaUGGCGGa---------GGaaCUUGGGGAGCCAU- -5'
21637 5' -57.1 NC_004812.1 + 19340 0.71 0.586299
Target:  5'- -cAgCGCCggggCCgaGAACCCCUCGGc- -3'
miRNA:   3'- uaUgGCGGa---GGaaCUUGGGGAGCCau -5'
21637 5' -57.1 NC_004812.1 + 155325 0.7 0.617056
Target:  5'- --cCCGCCUCCggGGACCCUggGGg- -3'
miRNA:   3'- uauGGCGGAGGaaCUUGGGGagCCau -5'
21637 5' -57.1 NC_004812.1 + 84583 0.7 0.637631
Target:  5'- -cACCGCCUCCUgcGACCCaC-CGGg- -3'
miRNA:   3'- uaUGGCGGAGGAacUUGGG-GaGCCau -5'
21637 5' -57.1 NC_004812.1 + 154459 0.7 0.637631
Target:  5'- -gGCCGCCgCCgcGAGCCCCgcccgCGGg- -3'
miRNA:   3'- uaUGGCGGaGGaaCUUGGGGa----GCCau -5'
21637 5' -57.1 NC_004812.1 + 120099 0.7 0.647916
Target:  5'- -aGCCGCCUCCggc--CCCCUgGGg- -3'
miRNA:   3'- uaUGGCGGAGGaacuuGGGGAgCCau -5'
21637 5' -57.1 NC_004812.1 + 77750 0.69 0.688843
Target:  5'- -gGCgGCCUCCgcccuccccGGGCUCCUCGGg- -3'
miRNA:   3'- uaUGgCGGAGGaa-------CUUGGGGAGCCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.