miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21639 5' -53.5 NC_004812.1 + 108028 0.66 0.979311
Target:  5'- cCGCGUcGCCgCCGGUGG--AgGUGACGg -3'
miRNA:   3'- -GUGCAcUGG-GGCUACUagUgCACUGC- -5'
21639 5' -53.5 NC_004812.1 + 25981 0.66 0.979311
Target:  5'- cCGgGcGGCCCCGAUGAcgACGacGACGg -3'
miRNA:   3'- -GUgCaCUGGGGCUACUagUGCa-CUGC- -5'
21639 5' -53.5 NC_004812.1 + 57114 0.66 0.979311
Target:  5'- cCGCGgucGGCCCCGAugccaugucugUGggCGCG-GGCGc -3'
miRNA:   3'- -GUGCa--CUGGGGCU-----------ACuaGUGCaCUGC- -5'
21639 5' -53.5 NC_004812.1 + 78022 0.66 0.979311
Target:  5'- gCGCGUaGACCUCGGUGGgggGgGUGGCc -3'
miRNA:   3'- -GUGCA-CUGGGGCUACUag-UgCACUGc -5'
21639 5' -53.5 NC_004812.1 + 96245 0.66 0.979311
Target:  5'- cCACGUcGACCCUGAcguccGAggCGCG-GGCGg -3'
miRNA:   3'- -GUGCA-CUGGGGCUa----CUa-GUGCaCUGC- -5'
21639 5' -53.5 NC_004812.1 + 151490 0.66 0.979311
Target:  5'- cCGgGcGGCCCCGAUGAcgACGacGACGg -3'
miRNA:   3'- -GUgCaCUGGGGCUACUagUGCa-CUGC- -5'
21639 5' -53.5 NC_004812.1 + 55583 0.66 0.978632
Target:  5'- cCGCGUGcACCCCGAggcGAUCcgcugccucgcgccGCGcgaGGCGg -3'
miRNA:   3'- -GUGCAC-UGGGGCUa--CUAG--------------UGCa--CUGC- -5'
21639 5' -53.5 NC_004812.1 + 45222 0.66 0.976985
Target:  5'- gGCGUGcCCgCCGAUGAcgUCAcCGcGACa -3'
miRNA:   3'- gUGCACuGG-GGCUACU--AGU-GCaCUGc -5'
21639 5' -53.5 NC_004812.1 + 121972 0.66 0.971768
Target:  5'- --gGUGGCCCgGGUGugCACGUucGACGg -3'
miRNA:   3'- gugCACUGGGgCUACuaGUGCA--CUGC- -5'
21639 5' -53.5 NC_004812.1 + 125973 0.66 0.968861
Target:  5'- uGCGUGacgGCCCUGAcgggggcgcUGuGUCAgGUGGCGg -3'
miRNA:   3'- gUGCAC---UGGGGCU---------AC-UAGUgCACUGC- -5'
21639 5' -53.5 NC_004812.1 + 112843 0.66 0.968861
Target:  5'- gGCGUGGCCUCGgcGcUCACGcgcugGGCu -3'
miRNA:   3'- gUGCACUGGGGCuaCuAGUGCa----CUGc -5'
21639 5' -53.5 NC_004812.1 + 97618 0.66 0.968861
Target:  5'- ----aGACCCUGAcGAUCGCGcucucgGACGg -3'
miRNA:   3'- gugcaCUGGGGCUaCUAGUGCa-----CUGC- -5'
21639 5' -53.5 NC_004812.1 + 81720 0.66 0.968861
Target:  5'- -uCGaUGGCCCCGugcacGAUCGCGUGcagcucGCGg -3'
miRNA:   3'- guGC-ACUGGGGCua---CUAGUGCAC------UGC- -5'
21639 5' -53.5 NC_004812.1 + 132932 0.66 0.968861
Target:  5'- aGCG-GACCCCGGccAUCACcagGGCGa -3'
miRNA:   3'- gUGCaCUGGGGCUacUAGUGca-CUGC- -5'
21639 5' -53.5 NC_004812.1 + 47601 0.66 0.968861
Target:  5'- uCGCGgcGACCCCGAg---CGCGccGACGg -3'
miRNA:   3'- -GUGCa-CUGGGGCUacuaGUGCa-CUGC- -5'
21639 5' -53.5 NC_004812.1 + 22028 0.66 0.968861
Target:  5'- gGCGUacuCCCCGAcGAcCACGUGgACGu -3'
miRNA:   3'- gUGCAcu-GGGGCUaCUaGUGCAC-UGC- -5'
21639 5' -53.5 NC_004812.1 + 81322 0.66 0.968559
Target:  5'- cCAgGUGggccaucGCCUCGGUGAUCACGgcGCGc -3'
miRNA:   3'- -GUgCAC-------UGGGGCUACUAGUGCacUGC- -5'
21639 5' -53.5 NC_004812.1 + 49419 0.67 0.965748
Target:  5'- -cCGUGGCCCCGGgccgcCGCGUcGugGa -3'
miRNA:   3'- guGCACUGGGGCUacua-GUGCA-CugC- -5'
21639 5' -53.5 NC_004812.1 + 115072 0.67 0.962422
Target:  5'- gACGagaagcagGACCCCcagGAUCACGUGgGCGu -3'
miRNA:   3'- gUGCa-------CUGGGGcuaCUAGUGCAC-UGC- -5'
21639 5' -53.5 NC_004812.1 + 71489 0.67 0.962078
Target:  5'- cCGCGc-GCCCCGGUaguuggcGGUCACGUGgguGCGg -3'
miRNA:   3'- -GUGCacUGGGGCUA-------CUAGUGCAC---UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.