miRNA display CGI


Results 1 - 20 of 1215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21647 3' -65.6 NC_004812.1 + 143930 0.66 0.543335
Target:  5'- uUCGGGGCUGCGaGGuCAUGauCG-GCUCCa -3'
miRNA:   3'- gGGCUCCGGCGC-CC-GUAC--GCgCGGGG- -5'
21647 3' -65.6 NC_004812.1 + 101291 0.66 0.543335
Target:  5'- cUCCGAcGCC-CGGGCGUcggcccGCGCcgaGCCCa -3'
miRNA:   3'- -GGGCUcCGGcGCCCGUA------CGCG---CGGGg -5'
21647 3' -65.6 NC_004812.1 + 12147 0.66 0.543335
Target:  5'- uCCCGc-GCUG-GGGCG-GCGCGCCg- -3'
miRNA:   3'- -GGGCucCGGCgCCCGUaCGCGCGGgg -5'
21647 3' -65.6 NC_004812.1 + 137867 0.66 0.543335
Target:  5'- gCCG-GGCCcucaccuucGauGGCGcGCgGCGCCCCa -3'
miRNA:   3'- gGGCuCCGG---------CgcCCGUaCG-CGCGGGG- -5'
21647 3' -65.6 NC_004812.1 + 113886 0.66 0.543335
Target:  5'- cUCUGuGGCCGCGGccaaccGCccGCG-GCCCg -3'
miRNA:   3'- -GGGCuCCGGCGCC------CGuaCGCgCGGGg -5'
21647 3' -65.6 NC_004812.1 + 139557 0.66 0.543335
Target:  5'- gUCCGcGGCgGcCGGGaccgagGCGCcCCCCg -3'
miRNA:   3'- -GGGCuCCGgC-GCCCgua---CGCGcGGGG- -5'
21647 3' -65.6 NC_004812.1 + 80830 0.66 0.543335
Target:  5'- aCCGA-GUCGgGGGCAccgugguggUGCcgaGCGgCCCCa -3'
miRNA:   3'- gGGCUcCGGCgCCCGU---------ACG---CGC-GGGG- -5'
21647 3' -65.6 NC_004812.1 + 25569 0.66 0.543335
Target:  5'- gCCG-GGCuCGCGGaagacgaaGCGcCGCCCCg -3'
miRNA:   3'- gGGCuCCG-GCGCCcgua----CGC-GCGGGG- -5'
21647 3' -65.6 NC_004812.1 + 24696 0.66 0.543335
Target:  5'- cCCgCGAGGCCcauaucCGGGCGa--GCGUCUCg -3'
miRNA:   3'- -GG-GCUCCGGc-----GCCCGUacgCGCGGGG- -5'
21647 3' -65.6 NC_004812.1 + 99153 0.66 0.543335
Target:  5'- cUCCGAcGGCCGCccggaGGGcCAUGCacuGCauggaCCCCg -3'
miRNA:   3'- -GGGCU-CCGGCG-----CCC-GUACG---CGc----GGGG- -5'
21647 3' -65.6 NC_004812.1 + 49425 0.66 0.543335
Target:  5'- cCCCGGGccGCCGCGucguGGaCAUGUcguccgGUGCCCg -3'
miRNA:   3'- -GGGCUC--CGGCGC----CC-GUACG------CGCGGGg -5'
21647 3' -65.6 NC_004812.1 + 34859 0.66 0.543335
Target:  5'- uCCCgGAGGCC-CGGcGCccccccgccGCGCGCcggCCCg -3'
miRNA:   3'- -GGG-CUCCGGcGCC-CGua-------CGCGCG---GGG- -5'
21647 3' -65.6 NC_004812.1 + 25183 0.66 0.543335
Target:  5'- cUCCGGGGCgGCGucGCG-GCG-GCUCCg -3'
miRNA:   3'- -GGGCUCCGgCGCc-CGUaCGCgCGGGG- -5'
21647 3' -65.6 NC_004812.1 + 22010 0.66 0.543335
Target:  5'- cUCCGAGaaCC-CGGGCAUG-GCGuacuCCCCg -3'
miRNA:   3'- -GGGCUCc-GGcGCCCGUACgCGC----GGGG- -5'
21647 3' -65.6 NC_004812.1 + 78312 0.66 0.543335
Target:  5'- gCCGGGGCgG-GGGCGga-GgGCCCg -3'
miRNA:   3'- gGGCUCCGgCgCCCGUacgCgCGGGg -5'
21647 3' -65.6 NC_004812.1 + 140564 0.66 0.543335
Target:  5'- cCCCGcGGUgauCGgGGGCcucUGCGCGCUg- -3'
miRNA:   3'- -GGGCuCCG---GCgCCCGu--ACGCGCGGgg -5'
21647 3' -65.6 NC_004812.1 + 110291 0.66 0.543335
Target:  5'- gCCUGAGGgUGUGccuGCccGUGCcCGCCCCg -3'
miRNA:   3'- -GGGCUCCgGCGCc--CG--UACGcGCGGGG- -5'
21647 3' -65.6 NC_004812.1 + 105631 0.66 0.543335
Target:  5'- gCCCgggggaaggGAGGCCGCGgaGGC-UG-GCGUCCa -3'
miRNA:   3'- -GGG---------CUCCGGCGC--CCGuACgCGCGGGg -5'
21647 3' -65.6 NC_004812.1 + 18546 0.66 0.543335
Target:  5'- gCUCGcGGCCaGCGcGGCGcggGCcCGCUCCg -3'
miRNA:   3'- -GGGCuCCGG-CGC-CCGUa--CGcGCGGGG- -5'
21647 3' -65.6 NC_004812.1 + 85609 0.66 0.543335
Target:  5'- cCCUGGcGGCC-CuGGCGgccgacccGCGgGCCCCg -3'
miRNA:   3'- -GGGCU-CCGGcGcCCGUa-------CGCgCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.