miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21647 5' -52.5 NC_004812.1 + 97245 0.66 0.983969
Target:  5'- cUCGAga-GCAUCAUCacccACcGCGACGCc -3'
miRNA:   3'- -AGCUacgCGUAGUAGa---UGcCGCUGUG- -5'
21647 5' -52.5 NC_004812.1 + 144721 0.66 0.983969
Target:  5'- cCGAggucGCGCA-CGUgcGCGGCGuCACg -3'
miRNA:   3'- aGCUa---CGCGUaGUAgaUGCCGCuGUG- -5'
21647 5' -52.5 NC_004812.1 + 94305 0.66 0.983969
Target:  5'- -gGGUGCGCuUgGUCgcCGGCuGCGCg -3'
miRNA:   3'- agCUACGCGuAgUAGauGCCGcUGUG- -5'
21647 5' -52.5 NC_004812.1 + 98292 0.66 0.983969
Target:  5'- aCG-UGCuCGUCGUCcggggcucCGGCGGCGCg -3'
miRNA:   3'- aGCuACGcGUAGUAGau------GCCGCUGUG- -5'
21647 5' -52.5 NC_004812.1 + 12369 0.66 0.983969
Target:  5'- gCGA-GCGCGUgAUCgucAUGGCGAgCAUc -3'
miRNA:   3'- aGCUaCGCGUAgUAGa--UGCCGCU-GUG- -5'
21647 5' -52.5 NC_004812.1 + 62684 0.66 0.983969
Target:  5'- gUCGccGUGCA-CGUgUACGGC-ACGCg -3'
miRNA:   3'- -AGCuaCGCGUaGUAgAUGCCGcUGUG- -5'
21647 5' -52.5 NC_004812.1 + 144029 0.66 0.983588
Target:  5'- -gGGUGUacGCGUUcgCggaggaggugcgGCGGCGGCACg -3'
miRNA:   3'- agCUACG--CGUAGuaGa-----------UGCCGCUGUG- -5'
21647 5' -52.5 NC_004812.1 + 25328 0.66 0.983395
Target:  5'- gCGA-GCGCGUCGccaccagccggcggUggGCGGCGACcACg -3'
miRNA:   3'- aGCUaCGCGUAGU--------------AgaUGCCGCUG-UG- -5'
21647 5' -52.5 NC_004812.1 + 85133 0.66 0.981996
Target:  5'- cCGggGCGCG-CGg--GCGGgGGCGCg -3'
miRNA:   3'- aGCuaCGCGUaGUagaUGCCgCUGUG- -5'
21647 5' -52.5 NC_004812.1 + 148953 0.66 0.981996
Target:  5'- gUCGggGCGCgagagcggGUCGUCggcgagGCGcGCGGCGa -3'
miRNA:   3'- -AGCuaCGCG--------UAGUAGa-----UGC-CGCUGUg -5'
21647 5' -52.5 NC_004812.1 + 77083 0.66 0.981996
Target:  5'- gUCGuuuCGCAUCcgCUgcGCGGCGAUgACg -3'
miRNA:   3'- -AGCuacGCGUAGuaGA--UGCCGCUG-UG- -5'
21647 5' -52.5 NC_004812.1 + 23445 0.66 0.981996
Target:  5'- gUCGggGCGCgagagcggGUCGUCggcgagGCGcGCGGCGa -3'
miRNA:   3'- -AGCuaCGCG--------UAGUAGa-----UGC-CGCUGUg -5'
21647 5' -52.5 NC_004812.1 + 109478 0.66 0.981996
Target:  5'- gCGGgcUGCgGCAUCGU--GCGGCGGCuGCu -3'
miRNA:   3'- aGCU--ACG-CGUAGUAgaUGCCGCUG-UG- -5'
21647 5' -52.5 NC_004812.1 + 71938 0.66 0.981996
Target:  5'- gCGAggacgGCGCGgggCGgccCUGCcGCGACGCg -3'
miRNA:   3'- aGCUa----CGCGUa--GUa--GAUGcCGCUGUG- -5'
21647 5' -52.5 NC_004812.1 + 96367 0.66 0.979847
Target:  5'- uUCGA-GCGCcgccuggcgucgGUCAUggcCGGCGACGCc -3'
miRNA:   3'- -AGCUaCGCG------------UAGUAgauGCCGCUGUG- -5'
21647 5' -52.5 NC_004812.1 + 5694 0.66 0.979847
Target:  5'- aCGccGCGCGgcgGUCUcCGGCGAgCGCg -3'
miRNA:   3'- aGCuaCGCGUag-UAGAuGCCGCU-GUG- -5'
21647 5' -52.5 NC_004812.1 + 91541 0.66 0.979847
Target:  5'- gCGAgccCGCGUCcgCcgaguacccGCGGCGGCGCa -3'
miRNA:   3'- aGCUac-GCGUAGuaGa--------UGCCGCUGUG- -5'
21647 5' -52.5 NC_004812.1 + 75967 0.66 0.979847
Target:  5'- ---cUGCGCGgccagCGcCUGCaGGCGGCGCa -3'
miRNA:   3'- agcuACGCGUa----GUaGAUG-CCGCUGUG- -5'
21647 5' -52.5 NC_004812.1 + 131202 0.66 0.979847
Target:  5'- aCGccGCGCGgcgGUCUcCGGCGAgCGCg -3'
miRNA:   3'- aGCuaCGCGUag-UAGAuGCCGCU-GUG- -5'
21647 5' -52.5 NC_004812.1 + 48150 0.66 0.979847
Target:  5'- cUCGAgGCGCggCGcCggGCGGCGGcCGCg -3'
miRNA:   3'- -AGCUaCGCGuaGUaGa-UGCCGCU-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.