miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21647 5' -52.5 NC_004812.1 + 64138 0.69 0.909824
Target:  5'- aCGcgGaCGCgAUCGgggACGGCGGCGCg -3'
miRNA:   3'- aGCuaC-GCG-UAGUagaUGCCGCUGUG- -5'
21647 5' -52.5 NC_004812.1 + 123117 0.71 0.860702
Target:  5'- cCGGUGC-CGUCGgcgGCGGCGGCGu -3'
miRNA:   3'- aGCUACGcGUAGUagaUGCCGCUGUg -5'
21647 5' -52.5 NC_004812.1 + 69447 0.7 0.868412
Target:  5'- aCGcgGCGCAUCcUCUgucgcGCGGCcgaGCACg -3'
miRNA:   3'- aGCuaCGCGUAGuAGA-----UGCCGc--UGUG- -5'
21647 5' -52.5 NC_004812.1 + 143466 0.7 0.868412
Target:  5'- ----cGCGCGUCgcuGUCgcCGGCGGCACc -3'
miRNA:   3'- agcuaCGCGUAG---UAGauGCCGCUGUG- -5'
21647 5' -52.5 NC_004812.1 + 104754 0.7 0.8759
Target:  5'- -aGGUGCGC-UUGUUgaaccCGGCGACGCg -3'
miRNA:   3'- agCUACGCGuAGUAGau---GCCGCUGUG- -5'
21647 5' -52.5 NC_004812.1 + 31251 0.7 0.8759
Target:  5'- gUCGGcaaaGCGCgccgggagGUCGUCgccCGGCGGCACg -3'
miRNA:   3'- -AGCUa---CGCG--------UAGUAGau-GCCGCUGUG- -5'
21647 5' -52.5 NC_004812.1 + 75758 0.7 0.88316
Target:  5'- cUCG--GCGUA-CGUCUcgGCGGCGGCGCc -3'
miRNA:   3'- -AGCuaCGCGUaGUAGA--UGCCGCUGUG- -5'
21647 5' -52.5 NC_004812.1 + 134858 0.7 0.890186
Target:  5'- cCGAcgGCGCGUCG---GCGGCaGACGCc -3'
miRNA:   3'- aGCUa-CGCGUAGUagaUGCCG-CUGUG- -5'
21647 5' -52.5 NC_004812.1 + 154387 0.69 0.909824
Target:  5'- gCGcGUGCGCugggCcgCgggccGCGGCGACACg -3'
miRNA:   3'- aGC-UACGCGua--GuaGa----UGCCGCUGUG- -5'
21647 5' -52.5 NC_004812.1 + 19626 0.71 0.844639
Target:  5'- ----cGCGCGUCcgGUCUcGCGGCGACGu -3'
miRNA:   3'- agcuaCGCGUAG--UAGA-UGCCGCUGUg -5'
21647 5' -52.5 NC_004812.1 + 19547 0.72 0.810152
Target:  5'- gUCGAUGCGgacCGUCAgCgacGCGGCcGACGCg -3'
miRNA:   3'- -AGCUACGC---GUAGUaGa--UGCCG-CUGUG- -5'
21647 5' -52.5 NC_004812.1 + 131508 0.72 0.801086
Target:  5'- cCGGaacGCGCGUCGgcgcGCGGCGGCGCc -3'
miRNA:   3'- aGCUa--CGCGUAGUaga-UGCCGCUGUG- -5'
21647 5' -52.5 NC_004812.1 + 37623 0.78 0.497029
Target:  5'- cCGGUGCGCGUCcagCUGCucGCGGCGCa -3'
miRNA:   3'- aGCUACGCGUAGua-GAUGc-CGCUGUG- -5'
21647 5' -52.5 NC_004812.1 + 128689 0.76 0.58852
Target:  5'- gCGAccugGCGCAUCcag-GCGGCGGCGCg -3'
miRNA:   3'- aGCUa---CGCGUAGuagaUGCCGCUGUG- -5'
21647 5' -52.5 NC_004812.1 + 151882 0.76 0.598941
Target:  5'- cCGggGCGCGUgcUCUACGGCGGCc- -3'
miRNA:   3'- aGCuaCGCGUAguAGAUGCCGCUGug -5'
21647 5' -52.5 NC_004812.1 + 96736 0.75 0.619853
Target:  5'- cUCGccGUGgGCGUCggcGUCUACGuGCGGCGCg -3'
miRNA:   3'- -AGC--UACgCGUAG---UAGAUGC-CGCUGUG- -5'
21647 5' -52.5 NC_004812.1 + 56234 0.75 0.619853
Target:  5'- cUCGcgGCGCGccgacUCGUCcGCGGgGGCGCg -3'
miRNA:   3'- -AGCuaCGCGU-----AGUAGaUGCCgCUGUG- -5'
21647 5' -52.5 NC_004812.1 + 19677 0.75 0.640803
Target:  5'- gCGAucUGCGCGUucaCGUCcagcGCGGCGGCGCg -3'
miRNA:   3'- aGCU--ACGCGUA---GUAGa---UGCCGCUGUG- -5'
21647 5' -52.5 NC_004812.1 + 98879 0.73 0.761367
Target:  5'- cUCGAcgGCGuCAUCGUCggaaagaggggcGCGGUGGCGCg -3'
miRNA:   3'- -AGCUa-CGC-GUAGUAGa-----------UGCCGCUGUG- -5'
21647 5' -52.5 NC_004812.1 + 38794 0.72 0.791859
Target:  5'- ----cGCGCGUgGUCUGCGG-GGCGCu -3'
miRNA:   3'- agcuaCGCGUAgUAGAUGCCgCUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.