miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21651 3' -58.3 NC_004812.1 + 21892 0.66 0.852672
Target:  5'- aAUCgUGuCGGggUCGCUGAGGCCgagGCGGu -3'
miRNA:   3'- gUAGgAC-GUCa-GGUGGCUCCGG---UGCC- -5'
21651 3' -58.3 NC_004812.1 + 124622 0.66 0.852672
Target:  5'- -cUCCgugGCGGaCCuGCCGcGGCCGgGGg -3'
miRNA:   3'- guAGGa--CGUCaGG-UGGCuCCGGUgCC- -5'
21651 3' -58.3 NC_004812.1 + 41017 0.66 0.852672
Target:  5'- --cCCUaCAGcCCGCCGcccGCCGCGGa -3'
miRNA:   3'- guaGGAcGUCaGGUGGCuc-CGGUGCC- -5'
21651 3' -58.3 NC_004812.1 + 152418 0.66 0.852672
Target:  5'- gGUCCccGCcGUucCCGCCGGGuacggcGCCGCGGg -3'
miRNA:   3'- gUAGGa-CGuCA--GGUGGCUC------CGGUGCC- -5'
21651 3' -58.3 NC_004812.1 + 32157 0.66 0.852672
Target:  5'- --gCCgcgGCcgcccguuGGUCCGCC--GGCCGCGGg -3'
miRNA:   3'- guaGGa--CG--------UCAGGUGGcuCCGGUGCC- -5'
21651 3' -58.3 NC_004812.1 + 1256 0.66 0.852672
Target:  5'- --gCCgcgGCcgcccguuGGUCCGCC--GGCCGCGGg -3'
miRNA:   3'- guaGGa--CG--------UCAGGUGGcuCCGGUGCC- -5'
21651 3' -58.3 NC_004812.1 + 78891 0.66 0.852672
Target:  5'- --cCCUG-AG-CC-CCGAGGCCAucCGGg -3'
miRNA:   3'- guaGGACgUCaGGuGGCUCCGGU--GCC- -5'
21651 3' -58.3 NC_004812.1 + 26910 0.66 0.852672
Target:  5'- gGUCCccGCcGUucCCGCCGGGuacggcGCCGCGGg -3'
miRNA:   3'- gUAGGa-CGuCA--GGUGGCUC------CGGUGCC- -5'
21651 3' -58.3 NC_004812.1 + 151019 0.66 0.852672
Target:  5'- --gCCUcGCAGgaccCCGCCGAcgGGCCGCc- -3'
miRNA:   3'- guaGGA-CGUCa---GGUGGCU--CCGGUGcc -5'
21651 3' -58.3 NC_004812.1 + 25511 0.66 0.852672
Target:  5'- --gCCUcGCAGgaccCCGCCGAcgGGCCGCc- -3'
miRNA:   3'- guaGGA-CGUCa---GGUGGCU--CCGGUGcc -5'
21651 3' -58.3 NC_004812.1 + 148248 0.66 0.8449
Target:  5'- --cCCgGCGG-CCGCCGAcgcgguggggcGGCCGCGc -3'
miRNA:   3'- guaGGaCGUCaGGUGGCU-----------CCGGUGCc -5'
21651 3' -58.3 NC_004812.1 + 1418 0.66 0.8449
Target:  5'- --cCCgacgGCGG-CCgcggggagggGCCGGGGCCGCGa -3'
miRNA:   3'- guaGGa---CGUCaGG----------UGGCUCCGGUGCc -5'
21651 3' -58.3 NC_004812.1 + 63037 0.66 0.8449
Target:  5'- aCAUUCggGUGGUaCCGCCuGGGgCGCGGg -3'
miRNA:   3'- -GUAGGa-CGUCA-GGUGGcUCCgGUGCC- -5'
21651 3' -58.3 NC_004812.1 + 125031 0.66 0.8449
Target:  5'- cCGUCCUcGCGccGUUCgacgucgcgGCCGAGGUCGCGu -3'
miRNA:   3'- -GUAGGA-CGU--CAGG---------UGGCUCCGGUGCc -5'
21651 3' -58.3 NC_004812.1 + 137317 0.66 0.8449
Target:  5'- --aCCUGaCGGUgcaCGCCG-GGCCGgGGg -3'
miRNA:   3'- guaGGAC-GUCAg--GUGGCuCCGGUgCC- -5'
21651 3' -58.3 NC_004812.1 + 97363 0.66 0.8449
Target:  5'- aCcgCCgccaaGCAGcUCGCCGcGGUCGCGGg -3'
miRNA:   3'- -GuaGGa----CGUCaGGUGGCuCCGGUGCC- -5'
21651 3' -58.3 NC_004812.1 + 46067 0.66 0.8449
Target:  5'- aCGUCCggGCAGgCCGgCGGGaCCACGa -3'
miRNA:   3'- -GUAGGa-CGUCaGGUgGCUCcGGUGCc -5'
21651 3' -58.3 NC_004812.1 + 117347 0.66 0.8449
Target:  5'- --cCCgGCGG-CCGCCGAcgcgguggggcGGCCGCGc -3'
miRNA:   3'- guaGGaCGUCaGGUGGCU-----------CCGGUGCc -5'
21651 3' -58.3 NC_004812.1 + 67819 0.66 0.8449
Target:  5'- aCGUCg-GCGaUCUgcGCCGAGGCgACGGu -3'
miRNA:   3'- -GUAGgaCGUcAGG--UGGCUCCGgUGCC- -5'
21651 3' -58.3 NC_004812.1 + 89157 0.66 0.8449
Target:  5'- cCGUCCUGguGcgccuccucgUCCACgcauauaagCGGGGCCugaagACGGg -3'
miRNA:   3'- -GUAGGACguC----------AGGUG---------GCUCCGG-----UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.