miRNA display CGI


Results 1 - 20 of 380 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21651 5' -54.8 NC_004812.1 + 54601 0.66 0.960968
Target:  5'- gUCGGCGugGCCgCGGgGAcGggCGGGGCc -3'
miRNA:   3'- gAGCCGC--UGGaGCUgCU-CuaGUUCCG- -5'
21651 5' -54.8 NC_004812.1 + 122323 0.66 0.960968
Target:  5'- -gCGGCGagucGCCUaucaCGAUGGGcgCGGGGUu -3'
miRNA:   3'- gaGCCGC----UGGA----GCUGCUCuaGUUCCG- -5'
21651 5' -54.8 NC_004812.1 + 16872 0.66 0.960968
Target:  5'- -aCcGCGACCuggUCGGCGuGGcCGAGGCc -3'
miRNA:   3'- gaGcCGCUGG---AGCUGCuCUaGUUCCG- -5'
21651 5' -54.8 NC_004812.1 + 99024 0.66 0.960968
Target:  5'- gUCGGCgGGCCUCGcGCGccccGUCucGGCu -3'
miRNA:   3'- gAGCCG-CUGGAGC-UGCuc--UAGuuCCG- -5'
21651 5' -54.8 NC_004812.1 + 153224 0.66 0.960968
Target:  5'- -gCGGCGagucGCCUaucaCGAUGGGcgCGGGGUu -3'
miRNA:   3'- gaGCCGC----UGGA----GCUGCUCuaGUUCCG- -5'
21651 5' -54.8 NC_004812.1 + 146364 0.66 0.960968
Target:  5'- -gCGGCGuucguCCUCGuCGcgcuGAUCucAGGCg -3'
miRNA:   3'- gaGCCGCu----GGAGCuGCu---CUAGu-UCCG- -5'
21651 5' -54.8 NC_004812.1 + 125261 0.66 0.960968
Target:  5'- -cCGGCGGCCcgggcucgCGGCGGGcgcgcgCGAGaGCg -3'
miRNA:   3'- gaGCCGCUGGa-------GCUGCUCua----GUUC-CG- -5'
21651 5' -54.8 NC_004812.1 + 101943 0.66 0.960968
Target:  5'- -aCGcGCGGCgCgggCGGCGGGcGUCAGGGg -3'
miRNA:   3'- gaGC-CGCUG-Ga--GCUGCUC-UAGUUCCg -5'
21651 5' -54.8 NC_004812.1 + 156162 0.66 0.960968
Target:  5'- -cCGGCGGCCcgggcucgCGGCGGGcgcgcgCGAGaGCg -3'
miRNA:   3'- gaGCCGCUGGa-------GCUGCUCua----GUUC-CG- -5'
21651 5' -54.8 NC_004812.1 + 33938 0.66 0.960968
Target:  5'- -cCGGCuccuGGCCUCGGgGGGGgcCGGGGUc -3'
miRNA:   3'- gaGCCG----CUGGAGCUgCUCUa-GUUCCG- -5'
21651 5' -54.8 NC_004812.1 + 109217 0.66 0.960968
Target:  5'- -aCGGUGcCC-CGGCGGGG-CGAGGg -3'
miRNA:   3'- gaGCCGCuGGaGCUGCUCUaGUUCCg -5'
21651 5' -54.8 NC_004812.1 + 31566 0.66 0.960968
Target:  5'- ---cGCGACCUCGgccGCGAcGUCGAacGGCg -3'
miRNA:   3'- gagcCGCUGGAGC---UGCUcUAGUU--CCG- -5'
21651 5' -54.8 NC_004812.1 + 74391 0.66 0.957358
Target:  5'- -aCGGCG-CUUCGGCGcGggCcGGGCc -3'
miRNA:   3'- gaGCCGCuGGAGCUGCuCuaGuUCCG- -5'
21651 5' -54.8 NC_004812.1 + 26754 0.66 0.957358
Target:  5'- uCUCGGCcGagUCGACGAaGAgggCGGGGUg -3'
miRNA:   3'- -GAGCCGcUggAGCUGCU-CUa--GUUCCG- -5'
21651 5' -54.8 NC_004812.1 + 99225 0.66 0.957358
Target:  5'- --gGGCGaacGCgUCGGCGGGggCGGGGg -3'
miRNA:   3'- gagCCGC---UGgAGCUGCUCuaGUUCCg -5'
21651 5' -54.8 NC_004812.1 + 95515 0.66 0.957358
Target:  5'- --gGGCGccGCCUCGACcccggCGGGGCg -3'
miRNA:   3'- gagCCGC--UGGAGCUGcucuaGUUCCG- -5'
21651 5' -54.8 NC_004812.1 + 155204 0.66 0.957358
Target:  5'- aUCcGCGAUggCGGCGAGAg-GGGGCg -3'
miRNA:   3'- gAGcCGCUGgaGCUGCUCUagUUCCG- -5'
21651 5' -54.8 NC_004812.1 + 99966 0.66 0.957358
Target:  5'- -cCGGUgGGCCgugcCGGCGGGggCcAGGCa -3'
miRNA:   3'- gaGCCG-CUGGa---GCUGCUCuaGuUCCG- -5'
21651 5' -54.8 NC_004812.1 + 134851 0.66 0.957358
Target:  5'- -gUGGCGACCgaCGGCGc-GUCGGcGGCa -3'
miRNA:   3'- gaGCCGCUGGa-GCUGCucUAGUU-CCG- -5'
21651 5' -54.8 NC_004812.1 + 3582 0.66 0.957358
Target:  5'- -gCGGCGGCggCGGCGGGc---GGGCg -3'
miRNA:   3'- gaGCCGCUGgaGCUGCUCuaguUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.