miRNA display CGI


Results 61 - 80 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21658 3' -60.5 NC_004812.1 + 5053 0.66 0.711188
Target:  5'- cGCGaggGCGcCGCGCCCCcggccccggccccgCCGUCGC-Cg- -3'
miRNA:   3'- -CGCa--UGU-GCGCGGGG--------------GGCAGCGaGag -5'
21658 3' -60.5 NC_004812.1 + 65402 0.67 0.694783
Target:  5'- cGCGagcuggACGcCGCGCCCCCCGcccccgagccCGCguccCUCg -3'
miRNA:   3'- -CGCa-----UGU-GCGCGGGGGGCa---------GCGa---GAG- -5'
21658 3' -60.5 NC_004812.1 + 479 0.67 0.704453
Target:  5'- uGCGUgcGCACGCGCCUgCUGccCGaaCUCa -3'
miRNA:   3'- -CGCA--UGUGCGCGGGgGGCa-GCgaGAG- -5'
21658 3' -60.5 NC_004812.1 + 140874 0.67 0.703488
Target:  5'- gGCGgccccCGCG-GCCCCucgaucgCCGUCGUUCUUg -3'
miRNA:   3'- -CGCau---GUGCgCGGGG-------GGCAGCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 103045 0.67 0.704453
Target:  5'- gGCuGUACGCGUGCUCCCgGagcaccucggCGCcCUCg -3'
miRNA:   3'- -CG-CAUGUGCGCGGGGGgCa---------GCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 82884 0.67 0.685066
Target:  5'- gGCGgccgACACGCGCaCCUCC-UCGCg--- -3'
miRNA:   3'- -CGCa---UGUGCGCG-GGGGGcAGCGagag -5'
21658 3' -60.5 NC_004812.1 + 218 0.67 0.684091
Target:  5'- cGgGU-CGCGCagccccgGCCCCCgCGgcccCGCUCUCc -3'
miRNA:   3'- -CgCAuGUGCG-------CGGGGG-GCa---GCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 83733 0.67 0.675308
Target:  5'- cGCGUGCcuggcgGCGCaGCUgCCCG-CGCUgUCc -3'
miRNA:   3'- -CGCAUG------UGCG-CGGgGGGCaGCGAgAG- -5'
21658 3' -60.5 NC_004812.1 + 83780 0.67 0.675308
Target:  5'- cGCGgccgcuCGCGgggaGCCCCCCGUgccuggUGCUCgUCg -3'
miRNA:   3'- -CGCau----GUGCg---CGGGGGGCA------GCGAG-AG- -5'
21658 3' -60.5 NC_004812.1 + 15293 0.67 0.684091
Target:  5'- -gGUACACGCGCCUcacgucgggggggUCCGUCuucuGCUC-Ca -3'
miRNA:   3'- cgCAUGUGCGCGGG-------------GGGCAG----CGAGaG- -5'
21658 3' -60.5 NC_004812.1 + 8704 0.67 0.685066
Target:  5'- gGCGggACGCccuccGCGCCCCCC-UCGCg--- -3'
miRNA:   3'- -CGCa-UGUG-----CGCGGGGGGcAGCGagag -5'
21658 3' -60.5 NC_004812.1 + 121074 0.67 0.675308
Target:  5'- ---cGCcCGCGCCCCCCG-CGCg--- -3'
miRNA:   3'- cgcaUGuGCGCGGGGGGCaGCGagag -5'
21658 3' -60.5 NC_004812.1 + 113445 0.67 0.685066
Target:  5'- aGCGUGgACGUGCgUCCCGUCuCUgUg -3'
miRNA:   3'- -CGCAUgUGCGCGgGGGGCAGcGAgAg -5'
21658 3' -60.5 NC_004812.1 + 148673 0.67 0.685066
Target:  5'- ---cGgACGCGCCCCCCGgccgCGC-Cg- -3'
miRNA:   3'- cgcaUgUGCGCGGGGGGCa---GCGaGag -5'
21658 3' -60.5 NC_004812.1 + 129898 0.67 0.693813
Target:  5'- cCGUGCgACGCGCCUgcguggaUCCGUCGC-Cg- -3'
miRNA:   3'- cGCAUG-UGCGCGGG-------GGGCAGCGaGag -5'
21658 3' -60.5 NC_004812.1 + 102956 0.67 0.694783
Target:  5'- uGC-UGCGCGCcgaguacgGCCCCUCGUucCGCUuCUCc -3'
miRNA:   3'- -CGcAUGUGCG--------CGGGGGGCA--GCGA-GAG- -5'
21658 3' -60.5 NC_004812.1 + 71468 0.67 0.694783
Target:  5'- cGCGUcCAgGCGCgCCCCCGcccgCGCg--- -3'
miRNA:   3'- -CGCAuGUgCGCG-GGGGGCa---GCGagag -5'
21658 3' -60.5 NC_004812.1 + 83919 0.67 0.694783
Target:  5'- cCGUu--CGUGUCCCCCGgcgcggaCGUUCUCg -3'
miRNA:   3'- cGCAuguGCGCGGGGGGCa------GCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 130702 0.67 0.694783
Target:  5'- cGCG-ACGCGCGCCCgCgG-CGCUg-- -3'
miRNA:   3'- -CGCaUGUGCGCGGGgGgCaGCGAgag -5'
21658 3' -60.5 NC_004812.1 + 31380 0.67 0.704453
Target:  5'- uGCGUgcGCACGCGCCUgCUGccCGaaCUCa -3'
miRNA:   3'- -CGCA--UGUGCGCGGGgGGCa-GCgaGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.