miRNA display CGI


Results 81 - 100 of 260 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21658 3' -60.5 NC_004812.1 + 32279 0.67 0.704453
Target:  5'- cCGUGCGCGacggccCGCCCCgCGcCGCgcccccUCUCg -3'
miRNA:   3'- cGCAUGUGC------GCGGGGgGCaGCG------AGAG- -5'
21658 3' -60.5 NC_004812.1 + 31380 0.67 0.704453
Target:  5'- uGCGUgcGCACGCGCCUgCUGccCGaaCUCa -3'
miRNA:   3'- -CGCA--UGUGCGCGGGgGGCa-GCgaGAG- -5'
21658 3' -60.5 NC_004812.1 + 71468 0.67 0.694783
Target:  5'- cGCGUcCAgGCGCgCCCCCGcccgCGCg--- -3'
miRNA:   3'- -CGCAuGUgCGCG-GGGGGCa---GCGagag -5'
21658 3' -60.5 NC_004812.1 + 10986 0.67 0.665516
Target:  5'- cCGUGCugGCGCgCCCCGgCGgaC-Ca -3'
miRNA:   3'- cGCAUGugCGCGgGGGGCaGCgaGaG- -5'
21658 3' -60.5 NC_004812.1 + 47053 0.67 0.665516
Target:  5'- uGCGUGCGgGCGUCCUgCGUCaGCg--- -3'
miRNA:   3'- -CGCAUGUgCGCGGGGgGCAG-CGagag -5'
21658 3' -60.5 NC_004812.1 + 102956 0.67 0.694783
Target:  5'- uGC-UGCGCGCcgaguacgGCCCCUCGUucCGCUuCUCc -3'
miRNA:   3'- -CGcAUGUGCG--------CGGGGGGCA--GCGA-GAG- -5'
21658 3' -60.5 NC_004812.1 + 85775 0.67 0.655701
Target:  5'- uCGUGgGCGuCGUCCCUCG-CGCUC-Ca -3'
miRNA:   3'- cGCAUgUGC-GCGGGGGGCaGCGAGaG- -5'
21658 3' -60.5 NC_004812.1 + 55986 0.67 0.704453
Target:  5'- cCGUGCGCGCGaUCCUggCCGgcgcccUCGUUCUCc -3'
miRNA:   3'- cGCAUGUGCGC-GGGG--GGC------AGCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 8889 0.67 0.655701
Target:  5'- cGCGUcauCACGUacaGCCCCCCG-CGC-Ca- -3'
miRNA:   3'- -CGCAu--GUGCG---CGGGGGGCaGCGaGag -5'
21658 3' -60.5 NC_004812.1 + 27471 0.67 0.655701
Target:  5'- gGCGgcgcCGCGCGCCCgCCGgcgCGCa--- -3'
miRNA:   3'- -CGCau--GUGCGCGGGgGGCa--GCGagag -5'
21658 3' -60.5 NC_004812.1 + 13079 0.67 0.665516
Target:  5'- cGCGgguCA-GCGCCCCCaugCGCUCg- -3'
miRNA:   3'- -CGCau-GUgCGCGGGGGgcaGCGAGag -5'
21658 3' -60.5 NC_004812.1 + 56255 0.67 0.655701
Target:  5'- cGCGgGgGCGCGCCCCUg--CGC-CUCg -3'
miRNA:   3'- -CGCaUgUGCGCGGGGGgcaGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 152979 0.67 0.655701
Target:  5'- gGCGgcgcCGCGCGCCCgCCGgcgCGCa--- -3'
miRNA:   3'- -CGCau--GUGCGCGGGgGGCa--GCGagag -5'
21658 3' -60.5 NC_004812.1 + 119833 0.67 0.655701
Target:  5'- cCGcGCcCGCGCCCCCCGgccCGCg--- -3'
miRNA:   3'- cGCaUGuGCGCGGGGGGCa--GCGagag -5'
21658 3' -60.5 NC_004812.1 + 52311 0.67 0.655701
Target:  5'- cCGUccccGC-CGuCGCCCgccggcgacggCCCGUCGCUCUUg -3'
miRNA:   3'- cGCA----UGuGC-GCGGG-----------GGGCAGCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 129898 0.67 0.693813
Target:  5'- cCGUGCgACGCGCCUgcguggaUCCGUCGC-Cg- -3'
miRNA:   3'- cGCAUG-UGCGCGGG-------GGGCAGCGaGag -5'
21658 3' -60.5 NC_004812.1 + 148673 0.67 0.685066
Target:  5'- ---cGgACGCGCCCCCCGgccgCGC-Cg- -3'
miRNA:   3'- cgcaUgUGCGCGGGGGGCa---GCGaGag -5'
21658 3' -60.5 NC_004812.1 + 140874 0.67 0.703488
Target:  5'- gGCGgccccCGCG-GCCCCucgaucgCCGUCGUUCUUg -3'
miRNA:   3'- -CGCau---GUGCgCGGGG-------GGCAGCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 82543 0.67 0.655701
Target:  5'- gGCGgcccGCGCGCGCCCgCCGcugcCGCccgaggggCUCg -3'
miRNA:   3'- -CGCa---UGUGCGCGGGgGGCa---GCGa-------GAG- -5'
21658 3' -60.5 NC_004812.1 + 150734 0.67 0.655701
Target:  5'- cCGcGCcCGCGCCCCCCGgccCGCg--- -3'
miRNA:   3'- cGCaUGuGCGCGGGGGGCa--GCGagag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.