miRNA display CGI


Results 101 - 120 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21658 3' -60.5 NC_004812.1 + 79070 0.67 0.665516
Target:  5'- cGCGUuuGCuCGuCGCCCCCCGaUC-CUCg- -3'
miRNA:   3'- -CGCA--UGuGC-GCGGGGGGC-AGcGAGag -5'
21658 3' -60.5 NC_004812.1 + 102756 0.67 0.665516
Target:  5'- cGCGUAgGCgGCGgcgucgucgagcCCCCCCG-CGUggUCUCg -3'
miRNA:   3'- -CGCAUgUG-CGC------------GGGGGGCaGCG--AGAG- -5'
21658 3' -60.5 NC_004812.1 + 82328 0.67 0.67433
Target:  5'- aGCGU-CugGCucaggacGCCCCCCGUgaggccCGCggcCUCg -3'
miRNA:   3'- -CGCAuGugCG-------CGGGGGGCA------GCGa--GAG- -5'
21658 3' -60.5 NC_004812.1 + 103261 0.67 0.67433
Target:  5'- cGCGcagGCGCGCgggggcgacggccGCCCCCCGcaCGCUgaCg -3'
miRNA:   3'- -CGCa--UGUGCG-------------CGGGGGGCa-GCGAgaG- -5'
21658 3' -60.5 NC_004812.1 + 61237 0.67 0.675308
Target:  5'- cGCGaguCGCuCGUCCCCgCGUCGCcgaugUCUCu -3'
miRNA:   3'- -CGCau-GUGcGCGGGGG-GCAGCG-----AGAG- -5'
21658 3' -60.5 NC_004812.1 + 95068 0.67 0.675308
Target:  5'- aGCGgcUACGCGaCCgCCgCCGUCcggggGCUCUUc -3'
miRNA:   3'- -CGCauGUGCGC-GG-GG-GGCAG-----CGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 38723 0.67 0.685066
Target:  5'- gGCGUACACGCGCUUCUCcaggGC-CUCc -3'
miRNA:   3'- -CGCAUGUGCGCGGGGGGcag-CGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 82884 0.67 0.685066
Target:  5'- gGCGgccgACACGCGCaCCUCC-UCGCg--- -3'
miRNA:   3'- -CGCa---UGUGCGCG-GGGGGcAGCGagag -5'
21658 3' -60.5 NC_004812.1 + 56255 0.67 0.655701
Target:  5'- cGCGgGgGCGCGCCCCUg--CGC-CUCg -3'
miRNA:   3'- -CGCaUgUGCGCGGGGGgcaGCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 152979 0.67 0.655701
Target:  5'- gGCGgcgcCGCGCGCCCgCCGgcgCGCa--- -3'
miRNA:   3'- -CGCau--GUGCGCGGGgGGCa--GCGagag -5'
21658 3' -60.5 NC_004812.1 + 127306 0.68 0.596692
Target:  5'- cGCGUGCAuCGgGCCCCggCUGcgCGC-CUCg -3'
miRNA:   3'- -CGCAUGU-GCgCGGGG--GGCa-GCGaGAG- -5'
21658 3' -60.5 NC_004812.1 + 138822 0.68 0.645868
Target:  5'- aUGUGCGCGCaCCCaCCC--CGUUCUCg -3'
miRNA:   3'- cGCAUGUGCGcGGG-GGGcaGCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 35477 0.68 0.616336
Target:  5'- gGCGUcgGCGCGCGagaUCCCCGaggggaUCGCgaUCUCc -3'
miRNA:   3'- -CGCA--UGUGCGCg--GGGGGC------AGCG--AGAG- -5'
21658 3' -60.5 NC_004812.1 + 125379 0.68 0.610436
Target:  5'- cGCGUGgACGCaCCUCCCGaCgugcugguugcccgcGCUCUCg -3'
miRNA:   3'- -CGCAUgUGCGcGGGGGGCaG---------------CGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 35360 0.68 0.606505
Target:  5'- gGUGUccgGgGCGaCGCCCCCCGUgGCaaaggaCUCg -3'
miRNA:   3'- -CGCA---UgUGC-GCGGGGGGCAgCGa-----GAG- -5'
21658 3' -60.5 NC_004812.1 + 11199 0.68 0.605523
Target:  5'- cGCGcaaguacUACACGCGCuCCUCCGacggaCGCaUCUCc -3'
miRNA:   3'- -CGC-------AUGUGCGCG-GGGGGCa----GCG-AGAG- -5'
21658 3' -60.5 NC_004812.1 + 11986 0.68 0.604541
Target:  5'- cGCGaugGCGCGCGUCCCgCCGUCaaaaGCgcagacgaccugCUCg -3'
miRNA:   3'- -CGCa--UGUGCGCGGGG-GGCAG----CGa-----------GAG- -5'
21658 3' -60.5 NC_004812.1 + 129757 0.68 0.606505
Target:  5'- gGCGgcgGCG-GCGCCCgCCGcggcggCGUUCUCg -3'
miRNA:   3'- -CGCa--UGUgCGCGGGgGGCa-----GCGAGAG- -5'
21658 3' -60.5 NC_004812.1 + 138151 0.68 0.596692
Target:  5'- cGCGggGC-CGCGcCCCCCCGcCGCg--- -3'
miRNA:   3'- -CGCa-UGuGCGC-GGGGGGCaGCGagag -5'
21658 3' -60.5 NC_004812.1 + 148306 0.68 0.596692
Target:  5'- gGCGUACGCGCGgagCUCCCGgCGCagaUCg -3'
miRNA:   3'- -CGCAUGUGCGCg--GGGGGCaGCGag-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.